RNA id: XM_036977148.1


Basic Information

Item Value
RNA id XM_036977148.1
length 3049
RNA type mRNA
GC content 0.46
exon number 9
gene id zgc:113162
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26518130 ~ 26549900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacaaccaaccacacctccacatctggcttcttcacctgcaagaACATCTGATCAtctaaagcccttttgtggagaaactcattctgattggctgggcctagctCCCCAGTGGATGGGCTTGGCTGCCAGACGAGCTGTCCAGGATGAGGTGTGAGTTGGAGGTGACCCCTGAACCCAGCAGCCCCACGCTGCTCGGAGAGGTAGCAGACACCTACTGCCAGGTGGACCGCTGGCAGAAGCTTCGCACCGCTGTCCGCAAACTGGAATTCTGGGAAGACTTCAGTGCCGAGCTGATTGGGAGTGGCTTCTTCTCCAAGGTGTACAAGGTGTCGCACAGCACAACGAGGAAAGTGATGGTGGTCAAGATCTATAAGAACGACGTGGACCAGGACAGCATCGTACGAGAGATCAGTCTACTGCAGAAGCTCTCACACCCCAACATTGTCAGGTATCTTGGAATCTGTGTGCGAGAAGAAAAGCTGTACCCAATACTGGAGTATGTGAGTGGTGGCTGTCTGGAGGACCTCCTGGCCCAGGAGGACGTGTCTCTGTGTTGGAGGGAGAAGGTGGACCTGGCCTGTGACATCAGCAGAGGCATGACCTACCTGCACTACAAGAACATCTACCACAGAGACCTCAACTCcaagaactgTCTGATACGGGAGACGTCTCGGGGCAGGGAGGCGGTTGTGACAGATTTTGGTCTGGCCAGGGAGGTAATGGTGGAGCTGCCAGCTAATGACCCAGAGAGGAAGATGTCTCTGGTGGGTTCTGCCTTCTGGATGGCACCCGAGATGCTCAGAGGGGAACCCTATGACCGCAAGGTGGATGTTTTCTCTTTTGGCATCATGCTGTGTGAGATTTTGGGCCGGATCTCAGCAGATCCCGAGATCCTTCCCAGAACACGGGACTATGGTCTAGACGTTGAGGCCTTCAGTGAGATGGTCCAAGGTTGTCCACGACGCATCCTGGAGCTGTCAGCCAACTGCTGTCTGATGGATGCGTTTCGGAGACCCTCCTTCTCAGAGCTGCTGGATGAGTTGGAGGACATCGCTGAGAGCCTGGAACCCCCCGACTCAAACCTGACCACTGGGTGAGGGGGTGGGGTCACCGTGTATCCCCCTCAGCCCTCCTCCCCTGGAACGGAGGACAGTGTGGACGGCAGCAGGCAGCCACCCCAGTCTTATACAGCAGAGGCACTTTATAGTTCAGGTCCGCTCTACAGGACCCAGGTGTAGGGCTCATAATGCAGCTCCTCCTGCTGActctgtgtgactctgtgtgtttctctgaaACAGAACCGgatcactggaagttcaacactCACCACCCCCCACTGTCTTTCTACAGTACAAACTCAGCTAGTGTGGGTCCATTTGAAAGGGGTGGGGGTCGAAACAGACTCAGAAATTCCCTAAAGAGCATTTCCTCCTGGCTCTTAAGTTGTATTCTATGATGTTATTATTCCACTTTAAGTTAAGGATGTAGAAATCCTTATTTGTAAATAGTACATAAGGAGGACTGTCTGAGTAGTCCTGATCCGTCTATTCTCTTCTATCATAATATCATAAAACAGGGGTTCCCAACCTAGATCTGCAATGCTTTAGGCTAGAAACATGCTGTTAATTGCCTGAGGAAGACTCAACTCTGATGCACACGGGACTATCTTTGGTTTGTCTCTGACATTCAGAAGCTTAGCTACGACCTTCTAAAGTCGATGAGTCAAAGAAATTGGACTGCTTGGGAAGTAATCTTATACAATGTGTGGctctgtcactatcaattgatcTATTCACTTTCTGTAAAAGAGAATATCTATAATTAAATGAAAGCATCTTAAAATGAtcataataaaacatatttatttgATAGCGGAATAACATTTGAGGAAATCAGGTCTAGACTTTATTTTCCTTATCCATTATTATTAAATAGCCCATCTAAAAGATGTCACGAGTCTTCTTAAACtacgtagaattgcaggaaattagcttcaaaacaacaacattttcctTGGTCCCTCAAATTAAACAAAATCAAGCTGGTGGTGTATTTAATATAGACTATCTCAATAAACAATAATAAATAGAAACGGGGAGAGGGGTGGGACATTTTTCAAATGTGAAAAAGGGGTCCCTGGGGGTAAAAGGTTGGGAATCCCtgattttaaaataacatttatGTAGGACTTCTCCCCCTTTCCTTCATCAGCCAGTCCAAGTGGTGACACAATCAAAAATAAATCCCTCCCTCTGTTAAAGTAGTCATCTGAATGATGTCATTTAACGGTGAGGTAATGGTGGACTGCAGCAGTGGAGCAGGATTGCAGGAGGCAGGATTGCAGGATTGCAGGATTGCAGGATTGCAGGATTGCAGGATTGCAGGAGGCAGGATTGCAGGAGGCAGGATTGCAGGAGGCAGGATTGCAGGATTACAGGATTGCAGGATTACAGGATTACAGGAGGCAGGATTACATTGCACTAGAAGTGACTGTTACAGTACATGGCTGAAATCTATAGGATGAAGGAATTGTGCTACTGTGTGGGTAAGGACCAAACAACACTCTTTCTCTCATTTCCTTCTTTTTCTGGTTTCTAACAGAGGTTAACAGAGGTGGCCAGTGTTAGGTAAGGGTTGGTGTTCAGTGTGGTTCAGTACTAGGGCCAAGTAGACAGAGGAAGGAGCGTTATCCCTCCCTCTCAGGATGTGAATAAAATAATACTAAACTCAATTAAACACTAACCTTAGGAAGAACTTAACTGTTGTGTATCGTTTTATACTAAATGCCTTTGTTTCTTGTAATGCTTGTACTGTACCTTTTTTGCCTCACCCTTTTGTGGGGATACATTTAGTTTACCATATAAGATTCATACAgtactttatgttcatattttgTGAATCTGTTGATTGGGTAGAATTTTGCTTACTTTACAGATCTTTAGATTTATATGGAAGATTTAAAGCAATGTTTAATAAAAGGCATAGAGcattgatgtgtgtgtatgtacttaAACTGGACTTTTAACGGGATAAAGAAAATCTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435959 lncRNA downstream 4706 26513165 ~ 26513424 (-) True G383720
TU435933 lncRNA downstream 25902 26459766 ~ 26492228 (-) True G383696
TU435948 lncRNA downstream 26167 26491494 ~ 26491963 (-) True G383709
TU435939 lncRNA downstream 35224 26481479 ~ 26482906 (-) True G383702
TU435937 lncRNA downstream 48618 26469187 ~ 26469512 (-) True G383700
TU436588 lncRNA upstream 101730 26634609 ~ 26635077 (-) True G384310
TU436591 lncRNA upstream 104990 26637869 ~ 26638485 (-) True G384313
TU436581 lncRNA upstream 131530 26664409 ~ 26669612 (-) True LOC110523516
TU436606 lncRNA upstream 148817 26681696 ~ 26688381 (-) True G384328
TU436640 lncRNA upstream 203919 26736798 ~ 26738785 (-) True G384357
XM_021602263.2 mRNA downstream 136454 26370618 ~ 26381676 (-) True fut7
XM_021602259.2 mRNA downstream 232906 26276691 ~ 26285224 (-) True LOC110523507
XM_036977145.1 mRNA downstream 233975 26276691 ~ 26284155 (-) False LOC110523507
XM_036977142.1 mRNA downstream 286297 26191030 ~ 26231833 (-) False LOC110523504
XM_036977143.1 mRNA downstream 286297 26191030 ~ 26231833 (-) True LOC110523504
XM_036977149.1 mRNA upstream 17527 26550406 ~ 26570773 (-) False LOC110523513
XM_021602267.2 mRNA upstream 17527 26550406 ~ 26572788 (-) False LOC110523513
XM_021602270.2 mRNA upstream 17527 26550406 ~ 26572788 (-) False LOC110523513
XM_021602271.2 mRNA upstream 21966 26554845 ~ 26572788 (-) True LOC110523513
NM_001160630.2 mRNA upstream 40053 26572932 ~ 26575046 (-) True snrpd3l
TU435637 other downstream 519350 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 1076336 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 2756323 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 2806239 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 2961587 23547200 ~ 23556543 (-) True LOC110522831
TU437993 other upstream 1476388 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 1681664 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 1818896 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 1958087 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 2470804 29003683 ~ 29004755 (-) True anapc2

Expression Profile