RNA id: NM_001160630.2


Basic Information

Item Value
RNA id NM_001160630.2
length 648
RNA type mRNA
GC content 0.43
exon number 4
gene id snrpd3l
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26572932 ~ 26575046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAAGCTTGAAAGTTTGAAGACCGCGGAAATCAACAAAGAACAACTTCAAATTAAGGATCTCTGCAAATATGTCCATCGGCGTGCCCATCAAGATCCTGCATGAAGCAGAGGGTCACATTGTGACCTGTGAGACCAACACTGGTGAAGTGTACAGAGGCAAGCTCATTGAGGCTGAGGACAACATGAACTGCCAGATGTCCAATATCACTGTGACTCATCGGGATGGCCGTGTAGCCCAACTAGAGCAGGTCTACATCCGGGGCAGCAAGATTCGCTTCCTGATTTTACCGGACATGTTAAAGAATGCTCCTATGTTAAAGAGCATGAAAAACAAGAACCAGGGCACCGGAGCAGGAAGGGGGAAGGCAGCCATTCTCAAAGCCCAGGTGGCTGCAAGAGGACGGGGTCGTGGTGGAGGAATTGGAAGAGGAACCATTTTCCAGAAGAGGCGATAGTATCTGCAATGGTTAATTTAAAAAGATTGCATGGTAgtatttttaatgtttttttcttaagagaatactttttttctttagcCAGACCTTTACATTTTGCAAGACGGACACGTTTTtgacattgtatttttttttttatatataaatgtatatttgTAATAAATTGTCGGTTCCCCTGTCTGCTAACTTC

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435959 lncRNA downstream 59508 26513165 ~ 26513424 (-) True G383720
TU435933 lncRNA downstream 80704 26459766 ~ 26492228 (-) True G383696
TU436588 lncRNA upstream 59563 26634609 ~ 26635077 (-) True G384310
TU436591 lncRNA upstream 62823 26637869 ~ 26638485 (-) True G384313
TU436581 lncRNA upstream 89363 26664409 ~ 26669612 (-) True LOC110523516
TU436606 lncRNA upstream 106650 26681696 ~ 26688381 (-) True G384328
TU436640 lncRNA upstream 161752 26736798 ~ 26738785 (-) True G384357
XM_021602267.2 mRNA downstream 144 26550406 ~ 26572788 (-) False LOC110523513
XM_021602270.2 mRNA downstream 144 26550406 ~ 26572788 (-) False LOC110523513
XM_021602271.2 mRNA downstream 144 26554845 ~ 26572788 (-) True LOC110523513
XM_036977149.1 mRNA downstream 2159 26550406 ~ 26570773 (-) False LOC110523513
XM_021602264.2 mRNA downstream 23032 26518130 ~ 26549900 (-) True zgc:113162
XM_036977150.1 mRNA upstream 18028 26593074 ~ 26614373 (-) False LOC110523514
XM_021602272.2 mRNA upstream 18029 26593075 ~ 26624100 (-) True LOC110523514
XM_036977153.1 mRNA upstream 54343 26629389 ~ 26669813 (-) False LOC110523516
XM_036977152.1 mRNA upstream 68725 26643771 ~ 26669813 (-) False LOC110523516
XM_036977151.1 mRNA upstream 68725 26643771 ~ 26669814 (-) False LOC110523516
TU435637 other downstream 574152 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 1131138 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 2811125 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 2861041 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 3016389 23547200 ~ 23556543 (-) True LOC110522831
TU437993 other upstream 1434221 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 1639497 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 1776729 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 1915920 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 2428637 29003683 ~ 29004755 (-) True anapc2

Expression Profile