RNA id: TU435344


Basic Information

Item Value
RNA id TU435344
length 204
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G383139
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25528423 ~ 25528769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagggtagcctagtggttagagcgtgtgACTAGTAACCGTctgactagtaaccggaaggttgcgagttcaaacccccaagctgacaaggttcaaatctgtcgttcttgaACAGGCACTgagctaggccgtcattgtaaccgtctgactagtaaccggaaggttgcgagttcaaacccccaagctgacaaggttcaaatctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435301 lncRNA downstream 31071 25470542 ~ 25497352 (-) True G383098
TU435297 lncRNA downstream 63929 25464288 ~ 25464494 (-) True G383094
TU434645 lncRNA downstream 76323 25451889 ~ 25452100 (-) True G382495
TU434638 lncRNA downstream 89561 25437411 ~ 25438862 (-) False LOC110523492
TU434551 lncRNA downstream 168640 25359213 ~ 25359783 (-) True G382411
TU435360 lncRNA upstream 21395 25550164 ~ 25550675 (-) True G383153
TU435306 lncRNA upstream 23375 25552144 ~ 25560997 (-) True G383102
TU435423 lncRNA upstream 156841 25685610 ~ 25737836 (-) True G383216
TU435431 lncRNA upstream 168609 25697378 ~ 25699734 (-) True G383222
TU435482 lncRNA upstream 250161 25778930 ~ 25779198 (-) True G383272
XM_021602229.2 mRNA downstream 87069 25438468 ~ 25441354 (-) False LOC110523492
XM_036977118.1 mRNA downstream 381589 24836561 ~ 25146834 (-) False LOC110522839
XM_036977142.1 mRNA upstream 662261 26191030 ~ 26231833 (-) False LOC110523504
XM_036977143.1 mRNA upstream 662261 26191030 ~ 26231833 (-) True LOC110523504
XM_036977145.1 mRNA upstream 747922 26276691 ~ 26284155 (-) False LOC110523507
XM_021602259.2 mRNA upstream 747922 26276691 ~ 26285224 (-) True LOC110523507
XM_021602263.2 mRNA upstream 841849 26370618 ~ 26381676 (-) True fut7
TU434637 other downstream 86629 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 1766616 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 1816532 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 1971880 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 2726172 22799700 ~ 22802251 (-) True jmy
TU435637 other upstream 468037 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 2480498 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 2685774 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 2823006 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 2962197 28490966 ~ 28491372 (-) False G386222

Expression Profile