RNA id: TU435360



Basic Information


Item Value
RNA id TU435360
length 305
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G383153
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25550164 ~ 25550675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTAAGTGTGTGATGTTCTTGTCTATGTTCATGGGGGAGGTGACACAGTTGTCTGGCACGTATTTATAGTTGTCCGGACAGGGCTCACTATCCACCGAGTTGACACAGGGGACTGGAACTCTCTCATACCCCCGGGCTATGTCTCTGTAgtgtggagggagCTGTTGAGGACCTCCTCCCCCTTGCTGCTCCTGGCCTCCCTAATCCTCCTGTTTGTTTGAAGGGTGAGCCACACCCTGGAGCTGCGGCTGCAGCAGTCCGGCGGGGTCTCCCCCTCGCGGTTCTTCAAGTTGACATCCACCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU435344 lncRNA downstream 21395 25528423 ~ 25528769 (-) True G383139
TU435301 lncRNA downstream 52812 25470542 ~ 25497352 (-) True G383098
TU435297 lncRNA downstream 85670 25464288 ~ 25464494 (-) True G383094
TU434645 lncRNA downstream 98064 25451889 ~ 25452100 (-) True G382495
TU434638 lncRNA downstream 111302 25437411 ~ 25438862 (-) False LOC110523492
TU435306 lncRNA upstream 1469 25552144 ~ 25560997 (-) True G383102
TU435423 lncRNA upstream 134935 25685610 ~ 25737836 (-) True G383216
TU435431 lncRNA upstream 146703 25697378 ~ 25699734 (-) True G383222
TU435482 lncRNA upstream 228255 25778930 ~ 25779198 (-) True G383272
TU435483 lncRNA upstream 229318 25779993 ~ 25780251 (-) True G383273
XM_021602229.2 mRNA downstream 108810 25438468 ~ 25441354 (-) False LOC110523492
XM_036977118.1 mRNA downstream 403330 24836561 ~ 25146834 (-) False LOC110522839
XM_036977142.1 mRNA upstream 640355 26191030 ~ 26231833 (-) False LOC110523504
XM_036977143.1 mRNA upstream 640355 26191030 ~ 26231833 (-) True LOC110523504
XM_036977145.1 mRNA upstream 726016 26276691 ~ 26284155 (-) False LOC110523507
XM_021602259.2 mRNA upstream 726016 26276691 ~ 26285224 (-) True LOC110523507
XM_021602263.2 mRNA upstream 819943 26370618 ~ 26381676 (-) True fut7
TU434637 other downstream 108370 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 1788357 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 1838273 23709798 ~ 23711891 (-) True G380610
TU432173 other downstream 1993621 23547200 ~ 23556543 (-) True LOC110522831
TU431801 other downstream 2747913 22799700 ~ 22802251 (-) True jmy
TU435637 other upstream 446131 25996806 ~ 25998780 (-) True G383422
TU437993 other upstream 2458592 28009267 ~ 28010077 (-) True G385617
TU438176 other upstream 2663868 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 2801100 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 2940291 28490966 ~ 28491372 (-) False G386222

Expression Profile