XLOC_022887


Basic Information

Item Value
gene id XLOC_022887
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18876733 ~ 18878980 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046965
AAGCATCGAAATGATACTGACCTAATGCCACCTCACAGGCTTTGCGCAGCTGCGAGTGATGAGCCTTTTTCACCTCCTTGTCGGCCAAGATCTTCTCCAAAGCTCtggttaaaaacatgtttttcgTCTTTTTGCCTTCATACATGACGCGGTGCGAACGGGGCGAGGAGGGCCTGTCCCAGTGGAGGCTGGTTCCGCGATTTTTAGATATTCCCGTATGATTGAGCTTTTCTCCGGCGGATGGTGCCCTCAATTGAGAAACATAAATAAAGCCAGAAGGTGGGGTAAATCCCTCAGTTTTCCATCAGCGACCTGCTGCCTGCGCCATGTTGGAAGGAAATGACGTCACGCACGTAGAAACGGCCGCAGTGAGGCAGAGTGAGGAGACGGTGAGGGAgtgtaacaaattataaataaaatatagataaatataatTAACAGAGATTTAAATGAAGCGAGGTTAAGatgaactaataaaataaatgataataataaaagattagATAAATGCGAGAGAATATATATAACgtataaattgtaaatataaaacgTCAAAATGGTAAACTCACCTCTTTGTTAGTTGTGGTTATAGATTTAGTCTAATTTAGATTTGTAGTCTGTGGTTATTCTGTGCAAAAGTTGGACAGCACACACAGCAAGTTAGTAATGCAACACAACACAGGCCTAACGTTATCTTAAAAGTGACTAGACCATGTGAATTTTAAAATTCTTAATCATATTTTTAATGTCAATGTTAAaattatatagtattataataataaaaatctaaatcctTACCAATTTCCTTAGCCTAGATTGATTTTATTGTGAAGAATTTGGTGGaatcaacatttattcatttattttccttaagcttaatccatttatttatcagaggtcgtctcagcagaatgaactgccaacttatccagcatatgttttacgcagcggatgcccttcctgccgcaacccagcactggtaaacatccatacactctcgcattcacactcatacacaatgcccaattttaatttattcaattttcctatggcgcatgtttttggactgtgggggaaaccggagcccccggaggaaacccacataaacacagggagaacaagcaaactccacacagaaatgccaactgattcacccggggcttgaaccagcgaccttcttgctgtgaggcgacagtgctaaccacttattAGACGATTAGATTTATATTAAGGTTTATGGAAATAGGAATATGGACATTTTTGAGCAATATTGTTAATAGTATCAAAAACtcattaattgcaaaaaaaaaaaaaaaaaacagtaaacaatattttactagatattttcaagacactagtagtattcagcctaaagtgcaatttaaaggcaatttaaatataaacagggggctaataatgttctCTTGtaaaattattcttttatttaaaaataaaaacaaataatataataaataataaataaactagcaAATACATAAAAACGTCTAGTCATTTTATTAACCTTTGACAATTATTTGAATCATTTACCAACCTGAATGAAAGAACCTaaagaaattaaagaaatttttatttataacattttatttataattctctTTTTCTATGCAGGTTTGATGGAGATTAATGAGTCAGTTCTTAATGAGGAACAAGCAACAGTGCTCTTCATCAAGCGGCGCtacatttggtttgttttttgaGTTATTCTCAGATTTTATTTACAAGATGTCTGAAATGTTATTGCTCTGTACACAAAGACGCTGACATCAGATGCGGAGGATGAGTCAAGGCCAGACGATATAAAGCTGTCTGTTCTCTAACAGTCTCAAAACTCAGAATAtacaatgaataaaaatattctacTGTTCATTTAAAAGGAATATATCAAGCCCCTTTTTATAAGGCGTCAAATAAATCTCCGGTGTCTGCAGAATGTCTTTTATCACAGCTAAATTTGCCCCATTTGGGTGTAAGCAAAAACACTGGTTTTGTGCGTGTCGCTTTacatgcaaatgagctgctttcaAGAATAAGGCGGAGCTTTTACATGCTATGACAGTCAAggaataacaaaacaattctcaTGCAGACAAAATATCTGAAACGTTCATGCCTGTTCAAACAATAATGGAGAGGAAGAGGTTACAACTTTTAGACTGAACTGGAACATTTCTGAATGATTATTGGAAACATTtatgtaattaaatgtattaaatttatgTTATGTATT
>TCONS_00045499
AAGCATCGAAATGATACTGACCTAATGCCACCTCACAGGCTTTGCGCAGCTGCGAGTGATGAGCCTTTTTCACCTCCTTGTCGGCCAAGATCTTCTCCAAAGCTCtggttaaaaacatgtttttcgTCTTTTTGCCTTCATACATGACGCGGTGCGAACGGGGCGAGGAGGGCCTGTCCCAGTGGAGGCTGGTTCCGCGATTTTTAGATATTCCCGTATGATTGAGCTTTTCTCCGGCGGATGGTGCCCTCAATTGAGAAACATAAATAAAGCCAGAAGGTGGGGTAAATCCCTCAGTTTTCCATCAGCGACCTGCTGCCTGCGCCATGTTGGAAGGAAATGACGTCACGCACGTAGAAACGGCCGCAGTGAGGCAGAGTGAGGAGACGGTTTGATGGAGATTAATGAGTCAGTTCTTAATGAGGAACAAGCAACAGTGCTCTTCATCAAGCGGCGCtacatttggtttgttttttgaGTTATTCTCAGATTTTATTTACAAGATGTCTGAAATGTTATTGCTCTGTACACAAAGACGCTGACATCAGATGCGGAGGATGAGTCAAGGCCAGACGATATAAAGCTGTCTGTTCTCTAACAGTCTCAAAACTCAGAATAtacaatgaataaaaatattctacTGTTCATTTAAAAGGAATATATCAAGCCCCTTTTTATAAGGCGTCAAATAAATCTCCGGTGTCTGCAGAATGTCTTTTATCACAGCTAAATTTGCCCCATTTGGGTGTAAGCAAAAACACTGGTTTTGTGCGTGTCGCTTTacatgcaaatgagctgctttcaAGAATAAGGCGGAGCTTTTACATGCTATGACAGTCAAggaataacaaaacaattctcaTGCAGACAAAATATCTGAAACGTTCATGCCTGTTCAAACAATAATGGAGAGGAAGAGGTTACAACTTTTAGACTGAACTGGAACATTTCTGAATGATTATTGGAAACATTtatgtaattaaatgtattaaatttatgTTATGTATT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046965 False 2248 lncRNA 0.35 1 18876733 18878980
TCONS_00045499 True 1008 lncRNA 0.42 2 18876733 18878980

Neighbor

gene id symbol gene type direction distance location
XLOC_022886 NA coding upstream 69841 18805156 ~ 18806892 (+)
XLOC_022885 cspp1a coding upstream 144338 18689980 ~ 18732395 (+)
XLOC_022884 NA coding upstream 368867 18485669 ~ 18507866 (+)
XLOC_022883 NA coding upstream 413296 18446689 ~ 18463437 (+)
XLOC_022881 tpk1 coding upstream 431479 18286427 ~ 18445254 (+)
XLOC_022888 prex2 coding downstream 69685 18948665 ~ 19207056 (+)
XLOC_022889 C24H8orf34 coding downstream 331021 19210001 ~ 19404475 (+)
XLOC_022890 sulf1 coding downstream 535581 19414561 ~ 19588659 (+)
XLOC_022891 NA coding downstream 712898 19591878 ~ 19697446 (+)
XLOC_022892 NA coding downstream 825735 19704715 ~ 19715224 (+)
XLOC_022882 BX927064.1 non-coding upstream 506916 18369702 ~ 18369817 (+)
XLOC_022880 BX255952.1 non-coding upstream 799074 18077543 ~ 18077659 (+)
XLOC_022895 NA non-coding downstream 1175490 20054470 ~ 20054958 (+)
XLOC_022896 NA non-coding downstream 1181792 20060772 ~ 20077296 (+)
XLOC_022903 CR931724.1 non-coding downstream 1909188 20788168 ~ 20788284 (+)

Expression


Co-expression Network