XLOC_022943


Basic Information

Item Value
gene id XLOC_022943
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23935071 ~ 23936888 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046997
GCGCGATAAAGGAGAAAATTAATCCTTGAGAAATGTGCCAATATTGAGGCCAAACGTGAATGGACATGGTTCGAGATGGGTAGCAGTTTGTGGCATTTCCCTTTGGCATATTGACCCATCTCTGCTTCAGCACTGAGAGAAGACTAGGAAGAAATGAGTCCATGTGTGTATTGCAGTGTAGTTCTTCTCTGTAAGTGTATATAGTCTTTTAACACATTTGACCCAAAACACTGGTTACCAATCACAGCCTCCCTAACTTTACCATCTGAGGTGCCTACATTACACTCAGAAAGGTTTTGAAACATGTTTGGTGCACTGTATAAAATTTAGTGATGACGTCCTGGGAGGTGCTGTGATTTGGTGAGGACTCCAATGTCAGATGGGTCTCCAGTGTGCTAGTGCTATATGGATTTGGTCGTGCTTTTTGTTGAGATGGTTTCtttaatcatttgttttgtttttaaggagAAGGATCAGCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046997 True 481 lncRNA 0.42 2 23935071 23936888

Neighbor

gene id symbol gene type direction distance location
XLOC_022942 pola1 coding upstream 2546 23840821 ~ 23932525 (+)
XLOC_022941 mybl1 coding upstream 117250 23791758 ~ 23817821 (+)
XLOC_022940 NA coding upstream 187560 23744369 ~ 23747511 (+)
XLOC_022939 TCF24 coding upstream 191681 23742690 ~ 23743390 (+)
XLOC_022938 ppp1r42 coding upstream 194172 23730061 ~ 23740899 (+)
XLOC_022944 hgd coding downstream 22219 23959107 ~ 24013098 (+)
XLOC_022945 NA coding downstream 45599 23982487 ~ 23985835 (+)
XLOC_022946 chodl coding downstream 77992 24014880 ~ 24028235 (+)
XLOC_022947 zgc:112408 coding downstream 127674 24064562 ~ 24071024 (+)
XLOC_022948 lipib coding downstream 149361 24086249 ~ 24101132 (+)
XLOC_022936 NA non-coding upstream 682787 23242252 ~ 23252284 (+)
XLOC_022935 NA non-coding upstream 704328 23230045 ~ 23230743 (+)
XLOC_022933 CR361560.1 non-coding upstream 845566 23089389 ~ 23089505 (+)
XLOC_022931 NA non-coding upstream 1197211 22724324 ~ 22737860 (+)
XLOC_022950 NA non-coding downstream 266718 24203606 ~ 24211341 (+)
XLOC_022952 NA non-coding downstream 516153 24453041 ~ 24458446 (+)
XLOC_022958 NA non-coding downstream 1001869 24938757 ~ 24942201 (+)
XLOC_022959 CR383672.1 non-coding downstream 1046247 24983135 ~ 24993102 (+)

Expression


Co-expression Network