XLOC_022938 (ppp1r42)


Basic Information

Item Value
gene id XLOC_022938
gene name ppp1r42
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23730061 ~ 23740899 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045581
TTCACCATTTCTGCTGACAATGTGTCACGCCGCATCTGAACTCTGAATCAACACTGGCGCGTGGAAATTGACCTCGCGTCGCGTCGCCATGGCAATATCAGCTCTCACTTCCTAAACAAACCCGAGACAAGGAAAAGAAAAGAGGCTTTAGCTGGGGATTGTTAACGCACAACATTTGTGCATTAAGTTCATCGTCTGTGCCTGACAAGACAATATAAGACTCAGGATACGGAGTAATAACACCCAAGGTCTTTCCAAGGAAATCTTTTTGAAGAATTATCCACCCTGCGATATTTCTGCACTCCAAGTCATTATGGTCCGCCTGACAGTGCATCTGATCGCAAAATTGGGCAGTCACTCAAAATCCAGCAGAAGCGAATCCTTCCAGCAGTACCTGAGGAAACTGACCCATCTCAACTTCTCAGACAAAAACATAGAGGAGATTGATGATCTATCTGTGTGCAGAAACCTCACAGTCCTTTACCTATATGACAATCAAATATCACAGATCTGCAACTTGGGGTTTGCCTCAAACCTTACACACTTATACATGCAAAATAACAATATATCTTGCATCGAGAACCTCTCGTCTCTACATAAGCTATCTAAACTGTTCCTGGGAGGAAACAGCATCACTGTGGTGGAGGGATTAGAGGAGTTGAAAAGCCTAAAGGAGCTGCATGTGGAAGGTCAGAAACTACCTTGTGGAGAAAAGCTGGCCTTTGACCCTCATTCCATTTCTAGCCTGTCTGAAACTCTGTGCATTTTAAATATCAGCAAAAATAACATTGATGAGTTATGGGATTTGGCTCCTCTCAGAAAAATGACCCATCTTTTTGCTGCCGATAACCAGCTACATGACATACAGGAGTTAGAGACGGTGTTCAGCCAATGGTTTAAACTGCGCCTTCTGGATCTGAGTAGAAATCCTGTGTGTCACAAACCTAAATACAGGGACAGACTAATAACTGTTTGCAAATTTCTAGATGACCTTGATgggaaacaaataaatgagctGTCCAGGCAGTTTCTAATCAATTGGAAAGCCTCAAAAGATGCAAAGAAGAAACCAGAGGATGGAAAAGACAACAAACTACAAGTGGCAAACCAACTTTCAACTTCAGCTGATTTTCACTTGGGTCCCCAACATCCTTCTGTCCGAGAGCGCAGCAGCTCTTTGAGTAAGCCGTCAGAAAATGAAAAGCCTGGCGTTACATTTCGGACAGACCAAATTCAAGCTGACAGCAGAGGAAGAGGGACAAGAGGAGATTCCAGTACCGAATGGCAATCTCTGAAAATATGAAGCTTTATCGAAGTCCTTTTGGCttcaaatatttaactcaaaaACTCAATCAATAAGCTTGCggtatgtgtgtgtgaagattTATGCTGaatactttttaagaaaaagaagCTCTGCCACTTATATAAAATGTGAATAATggcttaaattttatttatttgacaagtctTTTACACTGCCTTATTTGCAATTCTGACAGTTCTGTTTGAAAATACCTGtctgtgtttttaataaatttacattttaaggaA

Function

symbol description
ppp1r42 Predicted to enable actin binding activity; dynein complex binding activity; and tubulin binding activity. Predicted to be located in centrosome and manchette. Orthologous to human PPP1R42 (protein phosphatase 1 regulatory subunit 42).

GO:

id name namespace
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0002177 manchette cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070840 dynein complex binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040704-43 Predicted to enable actin binding activity; dynein complex binding activity; and tubulin binding activity. Predicted to be located in centrosome and manchette. Orthologous to human PPP1R42 (protein phosphatase 1 regulatory subunit 42).

Ensembl:

ensembl_id ENSDARG00000057632

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045581 True 1554 mRNA 0.41 10 23730061 23740899

Neighbor

gene id symbol gene type direction distance location
XLOC_022937 cops5 coding upstream 4690 23716918 ~ 23725371 (+)
XLOC_022936 NA coding upstream 477777 23242252 ~ 23252284 (+)
XLOC_022935 NA coding upstream 499318 23230045 ~ 23230743 (+)
XLOC_022934 pex2 coding upstream 515803 23202545 ~ 23214258 (+)
XLOC_022933 CR361560.1 coding upstream 640556 23089389 ~ 23089505 (+)
XLOC_022939 TCF24 coding downstream 1791 23742690 ~ 23743390 (+)
XLOC_022940 NA coding downstream 3470 23744369 ~ 23747511 (+)
XLOC_022941 mybl1 coding downstream 50859 23791758 ~ 23817821 (+)
XLOC_022942 pola1 coding downstream 99922 23840821 ~ 23932525 (+)
XLOC_022943 NA coding downstream 194172 23935071 ~ 23936888 (+)
XLOC_022931 NA non-coding upstream 992201 22724324 ~ 22737860 (+)
XLOC_022929 BX005378.1 non-coding upstream 1273100 22456844 ~ 22456961 (+)
XLOC_022945 NA non-coding downstream 241588 23982487 ~ 23985835 (+)
XLOC_022950 NA non-coding downstream 462707 24203606 ~ 24211341 (+)
XLOC_022952 NA non-coding downstream 712142 24453041 ~ 24458446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_05850844_05856405 PPP1R42 coding CI01000018 null 5850844 ~ 5856646 (+)