LOC110522993 (LOC106613952)


Basic Information

Item Value
gene id LOC110522993
gene name LOC106613952
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71424371 ~ 71434943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601417.2
tccatcacgcCCCTTCTATTGGCACTTGTGTCACTGGTAGTGATGGTTTCAGCGATGACACTCTTCTTTCTGACCAAAGGCTAATAGGAAAATCAGTCTATTCGGCTTGGATCTCTTTACGTTGTGTGTTCGTCAGACTGCCGAGGAACAGTGGCTAGAACTCGTGAGTCAGCAGGGAAGGAGACCCAACTATAACTGCGCTAAACACGTGGCACTTTGTATTCGCTTAGGAGAATACTTTGTATTCGTGCACTTCGGAGACTCGTCAAGCAAGCTACAGTAGCTCACTCCTGCTCTCCACAGGGCCGACGCGCTAACAGTTATTTATAGTTGGGAGGCCACAGAGAACGAACTACAATAGACCTCTGCGAAGAGGACGAGACGGCATCCGTGTTCTAATAGTTACTGTTATATCACAGGAGAGAGCGATGGAAACCAAAATACTCATCGCTCTGTGCGCTCTGATCCTCAGCTTGGGTTCGATTGTAGAAGGCCAGGACCTTGGTGctcactcctctccctcagaCGGACCTCTGACCCTAGGTATGTCCGGGGCTGTTCAGGCACCCCTCCCTGGaggttctccctctcctccagactctctgtccctccccagcACAGACTCCCCAAAGCCAGCCAGCAACCTCACTGATGGAGGGCTctccaacaacaacagcagcagtagcaacagcagcagtagcagtagcaacgACACAGCAGTCGTAGTGGTAAAAGAGGTCCCAGcCACCAGTGTGGGGGTCCCTGCCCCCACTCCCATCCCTGAGAAGACCCCTGGCCCGGAGAACCTCACTGAAGAAACCGCACAACCCTCTGATGCTCCCTCTGACAACCACACtgcccctacacacacacccaccaccacagtcCTCGTTCACAAACCTTCCAccatcccaacacacacacctgtctactccaccactccatccAGCCATGCCCCTCATTCCTCCAAAACTCACTCACCCATCACCACCACCGCTTCCCCAGCCCCTACTAGGCCTGAGACCCACCCAACTAACACCTCCGCTGCCCCCCAGCCCAGCTCAACCCCCAGCCCTGACCCAGATACCTCTAACCCTATCCAGCCTAAACAGCCCCTCAGTCCCTttctcaccaccactaccaccacctctcCCCCAGCTCTACCTACGTCTGAGCCCCAGACCCAGACATCCAGCATCACCCCTCTCCCGGCTTCCACCCCAGCCAGCAGCCCTCCATCCCAGGCTAAAACGCATGCCGACATCCCCTCTCAGCTCAATGTAGTGGATGGGGAACCAGTGTTCCATAGTGGTGGACCTGCCCTGGACCCTCTCCTAGCTGGACTAGTGTCCGTCTTCATCGTCACTGCAGCCATCATCACCCTGCTCCTCTTCATCAAACTGCGACGACGGGATCAGCGGCCTGAGTTCCGCAGGCTCCAGGACCTGCCTATGGATGATATGATGGAGGATACTCCCCTGTCTATGTACAGCTACTGATGATGATGGAGGACACAGTCTGACCTGATGGAACAGCCAGACCCCCACAgaccttctccctctctatagTCCAACCTGGCCTTCTATCCTTGTCCCCTGTCCTCATATCCTTTCTTTTATCCGCACTGACATGAGACGTGGACTGGTGAAAACCAGTTGCTGATAGGCATCCTCCATATTGCTTTTATCGACCCTGTGTTTTCAAATCAGTGCagatggaggagatgaggagagggaggcgCCATTTTAGACCATTGAGATGCATCCCTGGCGTTCCCTCACCACCTTTGTGTCTCTGTGAGCAACAGGGGGTTTCTGTGTGATTGTGACCAGCTCTTTTCCTGGTCTATGTGGATCCGAAGTTCCATCAGCAGCATTCCCACTTCTACATTCTACCTTCTATATTCAAGCGTGCACTCTGTCAGCTGTGTTTTGGTTGAGTGTTCGGTAACGAGGGATCCTCTCTTTCATCACTAGTTAGAGGCTACTTGTGCCTGGCTATATAGTGTTGTACAGTACGGTTGCACTTTACGTTACAGAGgacatgtatgtgtgtctgtgtgtgcgtgcgtgtctgtgcaTGGTTGAGCGAGCATGCACGTGCgtatgtgggggtgggggggtgtggtTTGGGGGTATTTAAGTTGAGCGTTTCCATGGAAACTAGTTCCTCTCTAAAGATCCTGCTTGTTATTGTTCATTTTGTTTCTCTATTGGGAGTCTCTGGTGGTGTTAGTTCATTGGGCTAACACAGCCTTGTGGCCTGCAGACAACCTGGGTTCAAACCTGGTCAGTCACACTTGTAAGGGGGAGGTTGTCTCTCTGAGTATCTTTAGTACATTTATCTTTATATAAAGCCTGAATGGACTCTTCCACCCCACTAGAGCTATTTACAGAGTACAATACAGAGAAACCATCCTCGATGGCGGCTCAATACATTCCATGCCTGTTAGAATTCTACATTTCAAAGCACGTGTTGTGAACTCTAAGGCTGGTTTGTCTGTTATTGTAGTTCTCACAGCCAGGCCGAGACCTATGTTCTAACATGTCTTAGTAAGGAAGAGCCTTGGGCAGATTCAGCAGCAGTGTTTCCAACTGAATTTGGCCAGTTGTCTTTCAATACAATTCATTCATTGGTTTAATCGTGTAGCTACTTGACATGAGGGTAACTTGTTGCCCAAGTCAGTCAGTGCTAGCCGCTACCATTAGCATGCAGTCCATTAACTGTCTCAAGGGAAGGGGACTCTGATAAACTACTCCATGAACACAGACATTGTAAATGTATAGCACgaggtcagagagagaaactCTTTAATGTAAGGCTTTTGTGACATAATGAGCATAATGCTCCATTGATGTGAGGGGAATGCAGTCTGTGTGTTAGTCTGCGTTTGTTagacacacaggagaaaagaacaccccctccctccttccctaccccAACCTCTATTGGGGAGACTTGAGTTGAAGCCATAGGCCTGTATTGGAGACAGTATATATGGCACAGACAGTGGAGTATGGCACAGAGCAGGGTCAAAGAGTTAGCCAGCTAAATTTCATAATATTCTGAATTAACTTTACATTCCAACTTCATAAAGAAAGGTAGACTTGAAATCAAACGACATGGTATAATTGACTTCAAAGTTGACATTTTTAAACAAATTAGAAAAGCAATAGTTATGTCTATTTCTGAATGTTTGTCAAAGTTAGCTGATTTAGGGCTAGATGAAATCCAGACTGCTGAAGATACGCGTTACAGcgcgattgaaatgtaaaggtcatttccatTTGAGCCGACGTATGTTGCGTTtcccgtgaatgcagtctccatgAATGCGGaaccattgcctttaaatttcaatcacgctatAGTGTAGATCTTCCACGGTCCGGATTTAGTCTAGGCTTTAGTGTTCCTGCGTGGGCTACCAGATTAGTTTGTTGCAGACGCCGCTGACGTTTGTTGCCTTGCCAGTTATCTGCATCAACGGGACTTAAGTCAGAGTTGAAACAGAGTGGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTGCACCCATGTGTTAGTAGTCCCTTATATGAAGTGCCAAAAAGTTAACTGGTTGTATTATAAGGTTGATATGTTTTACTGTTTGACGTCGATTCTGGAGTGATGATGTTTTTTGATTAAAGATATGAAACCATC
>TU492384
gtTTGGGGGTATTTAAGTTGAGCGTTTCCATGGAAACTAGTTCCTCTCTAAAGATCCTGCTTGTTATTGTTCATTTTGTTTCTCTATTGGGAGTCTCTGGTGGTGTTAGTTCATTGGGCTAACACAGCCTTGTGGCCTGCAGACAACCTGGGTTCAAACCTGGTCAGTCACACTTGTAAGGGGGAGGTTGTCTCTCTGAGTATCTTTAGTACATTTATCTTTATATAAAGCCTGAATGGACTCTTCCACCCCACTAGAGCTATTTACAGAGTACAATACAGAGAAACCATCCTCGATGGCGGCTCAATACATTCCATGCCTGTTAGAATTCTACATTTCAAAGCACGTGTTGTGAACTCTAAGGCTGGTTTGTCTGTTATTGTAGTTCTCACAGCCAGGCCGAGACCTATGTTCTAACATGTCTTAGTAAGGAAGAGCCTTGGGCAGATTCAGCAGCAGTGTTTCCAACTGAATTTGGCCAGTTGTCTTTCAATACAATTCATTCATTGGTTTAATCGTGTAGCTACTTGACATGAGGGTAACTTGTTGCCCAAGTCAGTCAGTGCTAGCCGCTACCATTAGCATGCAGTCCATTAACTGTCTCAAGGGAAGGGGACTCTGATAAACTACTCCATGAACACAGACATTGTAAATGTATAGCACgaggtcagagagagaaactCTTTAATGTAAGGCTTTTGTGACATAATGAGCATAATGCTCCATTGATGTGAGGGGAATGCAGTCTGTGTGTTAGTCTGCGTTTGTTagacacacaggagaaaagaacaccccctccctccttccctaccccAACCTCTATTGGGGAGACTTGAGTTGAAGCCATAGGCCTGTATTGGAGACAGTATATATGGCACAGACAGTGGAGTATGGCACAGAGCAGGGTCAAAGAGTTAGCCAGCTAAATTTCATAATATTCTGAATTAACTTTACATTCCAACTTCATAAAGAAAGGTAGACTTGAAATCAAACGACATGGTATAATTGACTTCAAAGTTGACATTTTTAAACAAATTAGAAAAGCAATAGTTATGTCTATTTCTGAATGTTTGTCAAAGTTAGCTGATTTAGGGCTAGATGAAATCCAGACTGCTGAAGATACGCGTTACAGcgcgattgaaatgtaaaggtcatttccatTTGAGCCGACGTATGTTGCGTTtcccgtgaatgcagtctccatgAATGCGGaaccattgcctttaaatttcaatcacgctatAGTGTAGATCTTCCACGGTCCGGATTTAGTCTAGGCTTTAGTGTTCCTGCGTGGGCTACCAGATTAGTTTGTTGCAGACGCCGCTGACGTTTGTTGCCTTGCCAGTTATCTGCATCAACGGGACTTAAGTCAGAGTTGAAACAGAGTGGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTTGACTCCATGTGGAGTGGAATGGTAGTTCATTTGCACCCATGTGTTAGTAGTCCCTTATATGAAGTGCCAAAAAGTTAACTGGTTGTATTATAAGGTTGATATGTTTTACTGTTTGACGTCGATTCTGGAGTGATGATGTTTTTTGATTAAAGATATGAAACCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601417.2 False 3790 mRNA 0.49 5 71424371 71434943
TU492384 True 1597 lncRNA 0.42 2 71433280 71434942

Neighbor

gene id symbol gene type direction distance location
si:dkey-183n20.15 LOC106613949 coding upstream 69453 71341502 ~ 71354918 (+)
LOC110522992 LOC106613477 coding upstream 99641 71309344 ~ 71324730 (+)
LOC110524471 LOC106613937 coding upstream 274271 71139770 ~ 71150100 (+)
impact ycu9 coding upstream 294143 71107095 ~ 71130228 (+)
LOC110524466 LOC106613934 coding upstream 359213 71055569 ~ 71065158 (+)
mmachc mmachc coding downstream 5173 71440116 ~ 71442558 (+)
LOC110524490 LOC106613954 coding downstream 27834 71462777 ~ 71490438 (+)
LOC110524491 LOC106614023 coding downstream 72524 71507467 ~ 71516303 (+)
echdc2 LOC106584286 coding downstream 82729 71517672 ~ 71531972 (+)
LOC110524493 ca163 coding downstream 107819 71542762 ~ 71544462 (+)
G434865 NA non-coding upstream 30939 71352043 ~ 71393432 (+)
G434840 NA non-coding upstream 54243 71366998 ~ 71370128 (+)
G434853 NA non-coding upstream 94007 71328360 ~ 71330364 (+)
G434835 NA non-coding upstream 117908 71306145 ~ 71306463 (+)
G434832 NA non-coding upstream 123432 71300728 ~ 71300939 (+)
G434925 NA non-coding downstream 24134 71459077 ~ 71510678 (+)
G434956 NA non-coding downstream 84534 71519477 ~ 71519754 (+)
G434957 LOC105030512 non-coding downstream 85675 71520618 ~ 71521807 (+)
G434964 NA non-coding downstream 92088 71527031 ~ 71527240 (+)
G434829 NA other upstream 125471 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 200793 71218789 ~ 71223578 (+)
G434653 NA other upstream 464439 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 3210267 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 3320837 68103179 ~ 68103534 (+)
ralgps2 LOC106613957 other downstream 240928 71552653 ~ 71687963 (+)
G436403 NA other downstream 1068517 72503460 ~ 72504435 (+)
G436588 NA other downstream 1560556 72995499 ~ 72995735 (+)
G437327 NA other downstream 2021358 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 3328261 74729349 ~ 74770168 (+)

Expression


Co-expression Network