G434853


Basic Information

Item Value
gene id G434853
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71328360 ~ 71330364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU492335
CACAATCAACAAGTAGCCTACTATCCAAACAGCGTTGTTCAGATCTCATTTCCTAGTGCTGCGCTGATCTCTGTATACATGGCATTGTATGTATGTGAATCAGTAGACGTACAAGTACTATCCACtgcaaaaaagttttaaaaaactaTGCCGTGAAATCAGCTTTGTACGCTGCTCTAGAGTCCAAATAATTTTAGCTGAAGTGTGTGTATAAAATGTAAGCAGCAGCACATGACATAAGAATTTCACATTTTCTCAAAACAGCAAATCCAACATCTAGCTAATTGCTTGCCTTGAGCTAAAGTAAGCCTCACTATAAGGCTAACAATCCAACCCAGTAGGGATCATAACATCAGTGGATAGCTATTTTAAAGAGACGATTGTTTCATTCAGTTATCCCAGTGCACCTCAAGCCAAGATGCATCAAACTCAATCCCCAAATGCGTTGTGGGTACAGAGGAAGGCTAATGTGCCCAAACAAATTTAAAGACATTCAAAAAGGTTGTCACAACATTTTCACTTCATCAGAGAGGAATAATATTAAAATCTAGGAGCTGTGTCCACAATTGCAGATGCAATACATCCAGGACAAGGTTTAATTAATCCACATTTCATAACCTAACTAATTTAATCTGGGTCTGTGAAACTGGCCCATAAATGCCAAGCTGGTGTTTGAACCCTGATAACAGTAGTGCTGTATAGATTATACTGTTGAAACCTTACTACTCATCTAGACAAGACATTCAGAGAATATAAAGGCCCAACAGTATTCCGTTAGAGCATGCAGTAAATTCTAGTACAGATCACAGTtaacacacagaaaataaataccATAAATAGTCCTGGATTTCTGATTTGATTAATTGATTCTAGGCTGCCGCACCAGAGATATATGTCAGTATGACATCACAGGATATTGACACAGGTCTGCAGTATAGACTTCCTACTTTTGTGTAAGAAACTAGTTATGGACGTTTGGTGGCCAGCACCAAATACACCTATTTCTCAGTTATCTGTGCTCCATTCATCCCTGGTGATtgtgacaacacagaggaggaagaTCAGAGGTCAAACTCTCTCTGTAGTCCAATGGTTAATAGGGTGTTTGTTACATCCTTTAACTGCAtagtgttgttgattcttcatttTGTAAAGTatgaaaacattttagaatatcACTTATATTCAGCTGGTAATAGCATTCAAATAAGCCATTTAAAGACCACATGTCTTACGGAATAAATGACATATCCCGGACTCAATATACAGCGTGTCAGGATGTCGAGATCAAGGTTCGTTCAATAGGCATTCCAGTCAGAGCTTGATGCTATCTAGACTAACACAGGTATATTGAAGGGCTCAGTCAGTGTTCTGTGCTAGGCTAAAGCTAATAAAGCATGTGGATAGGGTTGTCAACTCAGACCAAACTCATTCCAGGTGATTATAAGCAACCGTGCTGTTGTGTGCTACTGTGgggtatattacagtacagtgtatcAGTGAGGAAGAGGGAACCTAACTAGACCAAGTGCTCATGTTCACATCAGTCAGTGCATGCTTGTCCCCTCCCCAGGGGCTGAAAGCTAGTGTGCTTAAGGTCACTTGAGTGTGCACTTGtggaagggagtgagagaggagccATTTGTTTGTTTCCTTCAGATGTGGGAGACCCCGGTCTTAGTGGGCCGCCATGACAGCAGGCTGCCATGTCAGCAGGCTTCTGTTCCGGCCCAGCACGAACACACCTTATTAAACTAATCATGGTCTAACTTTAGCCTGCATACACGGTGGCCCACCTAAGTAGTCACCCATCCCAGGTCTAGTTAGAGGTGGTGGCAGGCATGCTGACAGAGAGAGTCCTGCGGGTGGCGTTGGTGACCTGGCGCTGCTGGGACAGGAAGGACTGACCGGGGGGCACCATAGAGGTGGAGCGACCCCCCAGACGGGCCTCGATCGCCAGCTTCTGGAAG

Function

NR:

description
protein Hook homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492335 True 1970 lncRNA 0.43 2 71328360 71330364

Neighbor

gene id symbol gene type direction distance location
LOC110522992 LOC106613477 coding upstream 3630 71309344 ~ 71324730 (+)
LOC110524471 LOC106613937 coding upstream 178260 71139770 ~ 71150100 (+)
impact ycu9 coding upstream 198132 71107095 ~ 71130228 (+)
LOC110524466 LOC106613934 coding upstream 263202 71055569 ~ 71065158 (+)
lamp3 lamp3 coding upstream 275148 71050056 ~ 71053212 (+)
si:dkey-183n20.15 LOC106613949 coding downstream 11138 71341502 ~ 71354918 (+)
LOC110522993 LOC106613952 coding downstream 94007 71424371 ~ 71434943 (+)
mmachc mmachc coding downstream 109752 71440116 ~ 71442558 (+)
LOC110524490 LOC106613954 coding downstream 132413 71462777 ~ 71490438 (+)
LOC110524491 LOC106614023 coding downstream 177103 71507467 ~ 71516303 (+)
G434835 NA non-coding upstream 21897 71306145 ~ 71306463 (+)
G434832 NA non-coding upstream 27421 71300728 ~ 71300939 (+)
G434831 NA non-coding upstream 28308 71299850 ~ 71300052 (+)
G434825 NA non-coding upstream 32908 71295221 ~ 71295452 (+)
G434824 NA non-coding upstream 33522 71294531 ~ 71294838 (+)
G434865 NA non-coding downstream 21679 71352043 ~ 71393432 (+)
G434840 NA non-coding downstream 36634 71366998 ~ 71370128 (+)
G434925 NA non-coding downstream 128713 71459077 ~ 71510678 (+)
G434829 NA other upstream 29460 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 104782 71218789 ~ 71223578 (+)
G434653 NA other upstream 368428 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 3114256 68212224 ~ 68214236 (+)
G430796 LOC106613888 other upstream 3224826 68103179 ~ 68103534 (+)
ralgps2 LOC106613957 other downstream 345507 71552653 ~ 71687963 (+)
G436403 NA other downstream 1173096 72503460 ~ 72504435 (+)
G436588 NA other downstream 1665135 72995499 ~ 72995735 (+)
G437327 NA other downstream 2125937 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 3432840 74729349 ~ 74770168 (+)

Expression


Co-expression Network