sgcb (LOC106560263)


Basic Information

Item Value
gene id sgcb
gene name LOC106560263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74009042 ~ 74016038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604322.2
AACACGGACAACTATCGGCTACAGTGATCCAGCTATGTGACATTTTGATACAAATGCCTCCAATTtagcattattttatatttttgctcataTAATTAGTACACGGACAAAAAACTATTAGCAAGTATTAAACCGGACCGATATATCTTATTTTATTCATTTGGATGAAGTGGTCTCCTCCACTGTCTTTCCCGACTCCGGAGCTGTCAACCGCAGTCGAAAAGGGAGGGTCAACATGGCGTCTGAGCAGgagagtTCCAACGGGCCTGTGAAGAGGTCTATGAGGGAGAAGGCCATCGAACGGCGGACCACCAACAAGGAGCACAACAGCAACTTTAAGGCAGGCTATGTGCCCATAGAGGAGGAGCGCCTGCACAAGACAGGCCTGAGAGGACGCAAGGGCAACATGGCTGTCTGCATCATCATCCTGCTCTTCCTGCTAGCACTCATCAACCTCATTATCACTCTAGTGATCTGGACGGTGATACGAATCGGGCCTAGTGGTTGTGACAGTATGGAGTTTCATGAAAGTGGGCTGCTGCGTTTCAAACAGAAGGCAGACATGGGCGTGGTCCACCCACTGCACAAGAGTACTGTGGGGGGCAGGAAGGACCAGGACCTGgttatcaccggcaacaacaacCCGGTGGTGTTCCAGCAGGGCTCCACTAAGCTCAGTGTTGAGAAAGAGAAGACGTCCATCACCAGTGACATGGGCATATCCTTCACTGACCCCCGCACTCAGAACACCTTCTTCAGCACAGACTTTGAAAACCACGAGTTCCACCTGCCCAAAGGAGTCAAAGTACTCAATGTGAAGAAGGCCTCCACAGAAAGGATCACCAGCAACGCTTCCTCTGACCTGTCCATCAAAGGGGACAGCAAGGCCATCATCCGTGGCAACGAGGGGGTCTTCATCATGGGCAAGACAGTGGAGTTCAGGATGGGAGGGGACATCGAGCTCAGAGCTGAGAACAGTATTATTTTGAACGGATCTGTGATGGTGAGCGTCACTCGCATGCCTAACCCCCCAGTGGGGGCCAATGTGTATTTCGACGAGGGTCTGTTGAGGTACAAGCTGTGTATGTGTGCAGACGGCACTCTGTTCCGTGTCCAGGTGAAGTATCAGAACATGGGCTGCCAGACCTCAGACAACCCATGTGGAAAGGCCCACTAAAGAGACTGGAACACAAACTGATGTTACACCATCCATCCTCTCCAACAATCAACAGATGGTCTGGCCAACCAGTGTTGAAATACCTTAGAATGGTGTACAGTGCATACTCTATATGCATTCAAAATGTAGCACACCAAGAAACACACTCTTTTTTTATGATGGTCTTTTTGTTTATCTGCATATTCACCTGGCCAAATATATCTAAATAAGTGCTAAAGTATTATCATTGTTTTTTTCTGACTATATGAAGTAACAACAGAAGCAGCACTTTACCAAGCCATCCAGTATTACCAGTATTCTGGATATTTCTATTAAtcattattttacatttatatttCCGCTGGCAGCTGTTTGTGACTCAAATACAAGTCACCCTGCATTAGGCATCAGCCACTGATCACATAGTGTGGGacactatatttatttattgattATGGTTAATTAAGGAGTTATGAGTTGGAGTTAGTGGGAGATGTGCGAAATAGGAAAGATAATTTTAGCCATTCAGTATTGCTGATTGCAGGAGATAATCTGTGCTTGTTTAAAGGTCTAGTGTAGATTTTCATGAGTTGACTCTCTGTTAGGAGAATTCTAACAGACTCTCTCAGCACTCTACATTGCTATCTACATCTGCCTTCTCATCCTATACGTGCCAaacactgtctctgtgtcttcacaAAGGAAGAGATTAGAGTGTCTTTAGTTATGATGCCAAATTGAATTAATTTCCATGTGTCTATAATATATTGCCTAATGTTCAGAAAAGggaatatacactatatatacaaaagtatgtggacacccttttaaatgagtggatttggctatttcagctacacccgttgctgacaggtgtataaaatcgagcacacagccatgcaatttccatagacaaacattggcagtagccttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12566 SGCB; beta-sarcoglycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604322.2 True 2091 mRNA 0.45 6 74009042 74016038

Neighbor

gene id symbol gene type direction distance location
LOC110524549 LOC106560259 coding downstream 473 73993983 ~ 74008569 (-)
ociad2 ocad2 coding downstream 36912 73969591 ~ 73972130 (-)
fryl NA coding downstream 55165 73850914 ~ 73953877 (-)
LOC118964642 LOC106560258 coding downstream 161283 73844674 ~ 73847759 (-)
palld LOC106560254 coding downstream 221448 73691856 ~ 73787594 (-)
LOC110523002 LOC106560265 coding upstream 46190 74062228 ~ 74075591 (-)
LOC110524553 LOC106560266 coding upstream 106265 74122303 ~ 74354093 (-)
LOC110524556 LOC106560268 coding upstream 389808 74405846 ~ 74501105 (-)
LOC118964644 kdr coding upstream 791168 74807206 ~ 74820307 (-)
LOC100135915 LOC106560272 coding upstream 832792 74848830 ~ 74891311 (-)
G437878 NA non-coding downstream 168856 73839901 ~ 73840186 (-)
G437873 NA non-coding downstream 176350 73832488 ~ 73832692 (-)
G437807 NA non-coding downstream 259978 73746879 ~ 73749064 (-)
G437771 NA non-coding downstream 323171 73685559 ~ 73685871 (-)
G437924 NA non-coding upstream 2933 74018971 ~ 74019172 (-)
G437926 NA non-coding upstream 5295 74021333 ~ 74021541 (-)
G437929 NA non-coding upstream 7393 74023431 ~ 74023643 (-)
G437933 NA non-coding upstream 16206 74032244 ~ 74032596 (-)
G437934 NA non-coding upstream 18265 74034303 ~ 74034613 (-)
LOC110524526 LOC106584218 other downstream 598703 73370439 ~ 73421683 (-)
G437079 NA other downstream 861914 73146358 ~ 73147128 (-)
G437074 NA other downstream 884004 73122112 ~ 73125038 (-)
G437054 NA other downstream 913706 73094794 ~ 73095336 (-)
G436873 NA other downstream 1233174 72774561 ~ 72775868 (-)
G439002 NA other upstream 849221 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 947422 74961377 ~ 74968484 (-)
G439594 NA other upstream 1247435 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1555211 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 2570420 76586458 ~ 76590370 (-)

Expression


Co-expression Network