LOC110523004


Basic Information

Item Value
gene id LOC110523004
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74961377 ~ 74968484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110523004
atgattgacttGGAGGAGTGCAtggtcacgcagtcatggGATTTCGGAATGAAAAGCTCTGGAGGGGCCAGGAGCGGGTACGTGATAAACTTCAGACGAACAGTGAACTCTTGCTCTTTGGGTAGATCCGCTGTCGGTGCTGACGTTCGCTGTCATCGTGGCATCTGGGGGGCTTCTGTTCATGATAGAGAAAGGAATGCTGAATAGTATGGAGACACCTCCACATCGGGAAGCAGCAAGGTCATACTACCTCAGACAAGCTCGTCATCCTGATCCATCTGTGGACGCAGAATCTCAGATTCTCCAGGAGATCCGTAACTGAACCATATGTGGTCAGAAGAATATGCCTCACAGTGTGAGGTCCCTGACCCCCTGCAGAGGAAAACCCTGCTGCAGCACGTCCTGGTGAACGACGAGCACTGCTTCCTCTGCTGCTACGTCCCCAAGGTGGCCTGCTCCAACTGGAAGAGGGTTCTGAAGGTCCTGAGTGGGACTCTGGAGAACGTGGACGTCAGCATCAAGATGGACCACAAGAGTGACCTACTATTCCTGTCCTCCCTGAAGTCCGAGGAGATCCGCTACAGGCTAAAACACTACTTCAAGTTCATGTTTGTGCGGGAGCCCATGGAGCGCCTGCTCTCCGCCTACAAGTTTGGGGAGATCAAGGCCTACCAGGAGAAGTACGGTGCTGAGATCATCAGGCCCTACAAAAAGTGCCATTCCAAGGATACAGCAGTGGCTGGGGATGATGTGACGTTTTCAGAGTTTGTGCGCTATCTGCTGGACGAAGATGTGGAGCACAAGAACGAGCACTGGATGCCCATCTACAACCTGTGCCAGCCATGTGCCGTGTCCTATGACTTCATTGGCTCCTATGAGCATCTGGAGAATGATGCTGCCTATATGCTACAGCGTATTGGTGCACCTCCACACATCCACTTCCCTGAGAGACAGATGTGGTACAAGCCTGTCACCACGGAGATGCTGCACTATAACCTGTGCAGTCTGCCACTGAAGCTCCTCAGGGAACTCCTACCCAAGTACATTCTAGACTTTTTCCTGTTTACttacccccccccctcaacaCCACCACTGAATACTGCAGACATTAACTGCAAGATTGAATCTTATAACTGGAAATTATGTGTATACAGTATCTTGTTACACATTTGCCATGTCTTTTTATTCCTAAGGAACCAGCAGTATTTTGATATGTTACTTCTTACATTAGATTTGTTACAGCATAGGGAAATATGAATGTGTTGGAGTAATATGTATAAAACCACTAAAACTGGAAAGGAATTGAATTTTAGAAGCCTTCCTTGATGCAAAGTCATCAATTACATCATCATAGGAAATCTGCCCAGCAATTGCATGGTTAATACTGATGACAGCAAGACCACTAAGGAGTTCCTGTGGCATGGTGGACCTCAGGTAGAATTTGATGAGTTTCAGCTTTGAAAAGCTCCTCTCTGCTTCAGCTACGGTCACTGGAAGAGTAAGACCAATTCTGAGAGCAGTCCATAAATGTGGATGCATTTCTGAGAGCTCCCTTTCGTGAATAAATATCAGCAGCGCAAGCAGGGTCATGGTCTTCAATGGCAAGTCAGGCAAATTCTTCAGTTCCTGTGCAAGCTCTCTGCCATCCAAGTCTGAGTGTTCTTCATAGTGCAGTGTCATACTAAGGGCCTCACATTGTTCTGTCAGCTCCTCATTTGAGAGACTTTGGAAGGTTGACAGCACTCCAAACTTCTCTCCCACATTTTCCAATGTGTAAAATCTTTCCTGAAGGGCTGAGGTTgcagcatcaacaacaacattgaaAAATGTCACCTCCAGCTTCTTCAGGGCATCACTCAAAGGCTCAACAAATGATTTGTATGAAAAGTGCCGCTTTGTGGACCTCAGCCTTTTTTGTTGTAGAATATCCTTGTGCTGTCATAAAGCCTGTTGCCCTGTAGTTTCTGAgacctctctttgtctttctgagAAGACTGACTGTAACATCCACATGTATACTGGGAGACTGCATCAGCTTGCTCACATGTTGGATCTGGTTCAAAATGTCATACCACACCACTGTACAGATGCTGAAGCGGTATGATCCCACCTCCTCTGATAAGGACTGGCCCTCAATCTTTATCACAGGGTCTTTGGTATGATCAGTGCCTCTCAGCGCTGCTGCCTGATACCTCAGTGGCTCAACACTCTTAACTTTACACTCCCACCTTATCTCAGTCCACATCTTCAAAGTGATGTCCACATGTTTTTTCAGGATGGCCCATCGCTGTGTGGAGGCTGAGGACAAGGTGTACAGTTTGTGTAAGATGCCAAAGTAACCTGTGGCATCGACAGAACTTTTAGCAGCATCAGCCACAACCAGGTTCAATATGTGAGCCCCACATGGCACACATAGAGCTCTTGGATTCATTTCCAGGAGTCTGGCTTGGACACTTTTGTTTTTGCCGCTCATGTTGGCCCCATTATCATAAGACGGTCCTCTACAGTCCTCAAAATGAATGTTTAGCTCCTCTAATCTTTTGAGAATCAGGGATGCCAAATGTTGGCCCGTGGACTCCTCTGCCTCCAACAACCCCATAAAATGTTCCTTTATGTGGGGCTCCTCCCTGAGTGACACAATTCTAAT
>TU497118
TTTCTGAGAGCTCCCTTTCGTGAATAAATATCAGCAGCGCAAGCAGGGTCATGGTCTTCAATGGCAAGTCAGGCAAATTCTTCAGTTCCTGTGCAAGCTCTCTGCCATCCAAGTCTGAGTGTTCTTCATAGTGCAGTGTCATACTAAGGGCCTCACATTGTTCTGTCAGCTCCTCATTTGAGAGACTTTGGAAGGTTGACAGCACTCCAAACTTCTCTCCCACATTTTCCAATGTGTAAAATCTTTCCTGAAGGGCTGAGGTTgcagcatcaacaacaacattgaaAAATGTCACCTCCAGCTTCTTCAGGGCATCACTCAAAGGCTCAACAAATGATTTGTATGAAAAGTGCCGCTTTGTGGACCTCAGCCTTTTTTG
>TU497119
ATGTGGTCAGAAGAATATGCCTCACAGTGTGAGGTCCCTGACCCCCTGCAGAGGAAAACCCTGCTGCAGCACGTCCTGGTGAACGACGAGCACTGCTTCCTCTGCTGCTACGTCCCCAAGGTGGCCTGCTCCAACTGGAAGAGGGTTCTGAAGGTCCTGAGTGGGACTCTGGAGAACGTGGACGTCAGCATCAAGATGGACCACAAGAGTGACCTACTATTCCTGTCCTCCCTGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110523004 False 2647 mRNA 0.56 3 74961377 74968484
TU497118 False 379 lncRNA 0.45 1 74962107 74962485
TU497119 True 237 TUCP 0.56 1 74963460 74963696

Neighbor

gene id symbol gene type direction distance location
LOC110522887 LOC106560273 coding downstream 50028 74901557 ~ 74911349 (-)
LOC100135915 LOC106560272 coding downstream 70066 74848830 ~ 74891311 (-)
LOC118964644 kdr coding downstream 141070 74807206 ~ 74820307 (-)
LOC110524556 LOC106560268 coding downstream 460272 74405846 ~ 74501105 (-)
LOC110524553 LOC106560266 coding downstream 607284 74122303 ~ 74354093 (-)
LOC110524565 LOC106560282 coding upstream 58124 75026608 ~ 75036101 (-)
LOC110524566 NA coding upstream 79961 75048445 ~ 75049425 (-)
LOC101268909 LOC101268909 coding upstream 113982 75082466 ~ 75091633 (-)
LOC110524567 LOC106560283 coding upstream 125134 75045027 ~ 75099520 (-)
LOC110524568 LOC106560284 coding upstream 143535 75112019 ~ 75148466 (-)
G439012 exoc1 non-coding downstream 27035 74932171 ~ 74934342 (-)
G438951 NA non-coding downstream 114761 74844036 ~ 74846616 (-)
G438959 NA non-coding downstream 125272 74835494 ~ 74836105 (-)
G438957 NA non-coding downstream 185175 74775199 ~ 74776202 (-)
G438952 NA non-coding downstream 189985 74770467 ~ 74771392 (-)
G439076 NA non-coding upstream 24652 74993136 ~ 74999899 (-)
G439571 NA non-coding upstream 246279 75214763 ~ 75215003 (-)
G439574 NA non-coding upstream 263121 75231605 ~ 75232553 (-)
LOC110524574 LOC106560290 non-coding upstream 361916 75299095 ~ 75333476 (-)
G439002 NA other downstream 33580 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 1551038 73370439 ~ 73421683 (-)
G437079 NA other downstream 1814249 73146358 ~ 73147128 (-)
G437074 NA other downstream 1836339 73122112 ~ 73125038 (-)
G437054 NA other downstream 1866041 73094794 ~ 73095336 (-)
G439594 NA other upstream 294989 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 602765 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1617974 76586458 ~ 76590370 (-)
G441483 NA other upstream 1933898 76902382 ~ 76902771 (-)
G441630 NA other upstream 2045515 77013999 ~ 77021375 (-)
G439065 NA non-coding upstream 2276 74964761 ~ 74965137 (-)
LOC110523004 NA other upstream 975 74961377 ~ 74968484 (-)

Expression


Co-expression Network