LOC110524567 (LOC106560283)


Basic Information

Item Value
gene id LOC110524567
gene name LOC106560283
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75045027 ~ 75099520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978405.1
aacacacacggacacaggAAGGCTGTTTTCTCCACAGAGGACAGTCGCCAGTCAGTCCATTATTGGACACCAAGGCTGTCTGAGTGTTGGGAGGCATCAAGCCTGTTGTTGTGTATGGACTGCTGCTGCACTAAAACAGAGAGGTGAATTAACACACAACCCTGACACACGGACAAACTCAGTCTGCTCCCAAAGCCGTGGCCatgtcatctccctctctccccatgccctccctcccccccagtcCACTGGCGATGGAGTACCTCAATGACTTTGACCTCCTTAAGTTTGAGGTGAAGCCtgacactcctcctctccctcccccctgcaCATTCCCCAAGTCTAGCCTACCCCACGACCCCTCCAGTTCCCCTGGTCCCTACACCAGCCTCAGCTCTAGCCCATACAACTCCCTGCCCCCCTCTCCAACACTGAGCGATGCCCACCCACCTCCCTCagcctcttcctccctctccccttcctcctcctcctccatctccttccctctgtccatcTCAAACAGCTACACTTCTGGCATCAGTTCTGGATCTCAGGGGAACGTGGAGGGTAGCCCCTCCCATGGGGGTGCCCAGGGTCCTAACCCTGCTTCTTTGGAGGACCTGATCTGGCTCGCAGCGCTGCAGCAGCAGTTTGGAGGGGAGGCGGGGGGACCTGCGTCCCTGCTGGGAGGTGGGCCAGAgcggggagacagagaaagagggtcGGTCGGCAGCTTCCTGGGCTGTGAGGACGCTGTGGAGGCTCTACTGAACTCAGCTGCAGCAGCTGTTAACTCACAGTTCCCAGTGCTTTCCCAGAGTTCCAGCAGTAACCTGGGGGATTCGGGTAGTGACAGTGGAGGTGACATTTCCTGCGCCAATGGGACGGATATGTGTCATCGtccactcctctacctctcctctggccCTCAATTGCTCCCCAACACCAACCCCTCTTCAGCATCCTACCCACAACCCCAGAGCCCCTCTGACCGACTTCATCACCATCATCcacatcataatcatcatcaccaCCCGCACCACCCCATGCAtggccatcatcatcatcatcatcatcacctccaAtGTGGTGGGGTAGATGAGCGTTTCTCAGACGAACAGCTGGTGAGCCTATCGGTGCGGGAGCTGAACAGACACCTGCGTGGCGTCAGTAAGGATGAGGTGGTGCGTCTCAAGCAGAAACGTCGTACGCTAAAGAATCGAGGCTATGCCCAGTCCTGTCGCTACAAACGCTTGCAGCACCGCCACGCACTGGAGTCTGAGAAACACGTCCTCACACAACAgTTGGAACAGCTGCAGTGTGAGCTATCTCGGGTGCTGAGGGAGAGGGACGCCTACAAGGCTCGCTACGAAAAGCTTGTCAGCACAAACGAGGCTCCACCTACCCACGCCAACAACCCCCCCTCACCACCACCTGACTACTTCCTCTGAGGACATACCCAGAGGAGAGGACATAAAAATTAACGGATGAGAGTGGGATAAATGAGCAGGTCAGCCTAAATAAGGCCAGCACTGGGAAATCAGTCtttgggaggaagggagggagggttgggggtgtgtgtgcgtgtgtggaggTTGTCAGGCAGGTAGTGGGGTTAGAACTAGGCCATATATGACTGTGAAATCAACCTGCTGAGCTGGCACTTGACTGTTAACTTAGGGTTAGAATCGAGCCCTAGATTGCTTCATAAACCGGACTAATGATGAAGACTTCAGTTTTGATATCACAGTGACGTTCATAGTAGCACAAAGACTCAATGAAACATCTTCAGGATGCATCCTGCACTGGTCAAATCAGGGCATGGAAGGTCACAGGTCATCCTCAAACTGAACAAACTCCATCGTAGCATTCATCAACCTTAACACTATCAACCTATCTATGCACATTTATTTCAAGCAGAACAAATTAAAAGATGAACTGATATCCAAACAATGGTTGGGTTGAATCCAGCCCCTGACATGCacactgtgatggtgtaggtTGACTGGGCTCATTGGAAACTCAAAGGTCTGAGTAGTGCTGTGGTATtggatgtgtagtggtgtatgaTCTTCAAGTGTCCATGGCATGCAGTTGTACTCGCCAGCAAATATTTCACAGTTGCCTACCAAGGTGTTTTTGCTCACCAAGACTTGTTACCCACTATCACATTTTTAAGATGAATAATCATAGAAAAATAATGTACAAGGATCCTTTTTCTGATGGAATTCCTGTGGTTGTGCTAAATGAAAAATTGACATAAACACTCATGTATAAAGTAGATACATAAAAAAAGACAAATTAAAACATATCCATACTTTGCTTGT
>XM_036978406.1
tgcatgtgtgtgtggagagTTTGTTTGGGGGATGGGTGTAAGTGCATGGGTGTATGTTGAtgcaaaaaatattacattttaaacAGAGTTAATAGTATTTTTGGCAATGACAAAAAATGTGGGGGATAGTGGAGTTGTGGGGAcagaatgagcgagagagagaaggagagagagagagagagagagagagagagcgagagagagagagagatttgaacCATGATTGCAGAGAGCCATGGCTCTAGAGAGGGATATtggggtgagagagaagaggggagtgtgatgaagagggagacagggatttgctacagagaggagagaaagagagggggcagTGACACTCAGTGACAGAGTGTCATATGCACTCACATGTGCACACACCCTCtcttttttgtctctctctgtgaacgTGTGTCGGTAAATCCGTCAGTATTGTCACTTTTGTGGGGGGAAATGGTGAGAGGACATCTAAATCAATCATCCTATCTATGACCTAcggacCAAGAAgaaacacacacggacacaggAAGGCTGTTTTCTCCACAGAGGACAGTCGCCAGTCAGTCCATTATTGGACACCAAGGCTGTCTGAGTGTTGGGAGGCATCAAGCCTGTTGTTGTGTATGGACTGCTGCTGCACTAAAACAGAGAGCTACACTTCTGGCATCAGTTCTGGATCTCAGGGGAACGTGGAGGGTAGCCCCTCCCATGGGGGTGCCCAGGGTCCTAACCCTGCTTCTTTGGAGGACCTGATCTGGCTCGCAGCGCTGCAGCAGCAGTTTGGAGGGGAGGCGGGGGGACCTGCGTCCCTGCTGGGAGGTGGGCCAGAgcggggagacagagaaagagggtcGGTCGGCAGCTTCCTGGGCTGTGAGGACGCTGTGGAGGCTCTACTGAACTCAGCTGCAGCAGCTGTTAACTCACAGTTCCCAGTGCTTTCCCAGAGTTCCAGCAGTAACCTGGGGGATTCGGGTAGTGACAGTGGAGGTGACATTTCCTGCGCCAATGGGACGGATATGTGTCATCGtccactcctctacctctcctctggccCTCAATTGCTCCCCAACACCAACCCCTCTTCAGCATCCTACCCACAACCCCAGAGCCCCTCTGACCGACTTCATCACCATCATCcacatcataatcatcatcaccaCCCGCACCACCCCATGCAtggccatcatcatcatcatcatcatcacctccaAtGTGGTGGGGTAGATGAGCGTTTCTCAGACGAACAGCTGGTGAGCCTATCGGTGCGGGAGCTGAACAGACACCTGCGTGGCGTCAGTAAGGATGAGGTGGTGCGTCTCAAGCAGAAACGTCGTACGCTAAAGAATCGAGGCTATGCCCAGTCCTGTCGCTACAAACGCTTGCAGCACCGCCACGCACTGGAGTCTGAGAAACACGTCCTCACACAACAgTTGGAACAGCTGCAGTGTGAGCTATCTCGGGTGCTGAGGGAGAGGGACGCCTACAAGGCTCGCTACGAAAAGCTTGTCAGCACAAACGAGGCTCCACCTACCCACGCCAACAACCCCCCCTCACCACCACCTGACTACTTCCTCTGAGGACATACCCAGAGGAGAGGACATAAAAATTAACGGATGAGAGTGGGATAAATGAGCAGGTCAGCCTAAATAAGGCCAGCACTGGGAAATCAGTCtttgggaggaagggagggagggttgggggtgtgtgtgcgtgtgtggaggTTGTCAGGCAGGTAGTGGGGTTAGAACTAGGCCATATATGACTGTGAAATCAACCTGCTGAGCTGGCACTTGACTGTTAACTTAGGGTTAGAATCGAGCCCTAGATTGCTTCATAAACCGGACTAATGATGAAGACTTCAGTTTTGATATCACAGTGACGTTCATAGTAGCACAAAGACTCAATGAAACATCTTCAGGATGCATCCTGCACTGGTCAAATCAGGGCATGGAAGGTCACAGGTCATCCTCAAACTGAACAAACTCCATCGTAGCATTCATCAACCTTAACACTATCAACCTATCTATGCACATTTATTTCAAGCAGAACAAATTAAAAGATGAACTGATATCCAAACAATGGTTGGGTTGAATCCAGCCCCTGACATGCacactgtgatggtgtaggtTGACTGGGCTCATTGGAAACTCAAAGGTCTGAGTAGTGCTGTGGTATtggatgtgtagtggtgtatgaTCTTCAAGTGTCCATGGCATGCAGTTGTACTCGCCAGCAAATATTTCACAGTTGCCTACCAAGGTGTTTTTGCTCACCAAGACTTGTTACCCACTATCACATTTTTAAGATGAATAATCATAGAAAAATAATGTACAAGGATCCTTTTTCTGATGGAATTCCTGTGGTTGTGCTAAATGAAAAATTGACATAAACACTCATGTATAAAGTAGATACATAAAAAAAGACAAATTAAAACATATCCATACTTTGCTTGT
>TU497163
TGATATCCAAACAATGGTTGGGTTGAATCCAGCCCCTGACATGCacactgtgatggtgtaggtTGACTGGGCTCATTGGAAACTCAAAGGTCTGAGTAGTGCTGTGGTATtggatgtgtagtggtgtatgaTCTTCAAGTGTCCATGGCATGCAGTTGTACTCGCCAGCAAATATTTCACAGTTGCCTACCAAGGTGTTTTTGCTCACCAAGACTTGTTACCCACTATCACATTTTTAAGATGAATAATCATAGAAAAATAATGTACAAGGATCCTTTTTCTGATGGAATTCCTGTGGTTGTGCTAAATGAAAAATTGACATAAACACTCATGTATAAAGTAGATACATAAAAAAAGACAAATTAAAACATATCCATACTTTGCTTGTtgaaaataacatacatttttgtcataATGACTATGAAGAATAATTGCAGTGTGCTATCTGTGATTCGTGAACGGACCTCCAAGAGACTTCTTCTGTCAACCTGTACTGTAGGATTTCCACAATCAATCAGTTGGCTCTAACATGTGAAACAAGAAACTGTGGTTGCTGCAGTTGATGTCGTCAA
>TU497167
aacCATGATTGCAGAGAGCCATGGCTCTAGAGAGGGATATtggggtgagagagaagaggggagtgtgatgaagagggagacagggatttgctacagagaggagagaaagagagggggcagTGACACTCAGTGACAGAGTGTCATATGCACTCACATGTGCACACACCCTCtcttttttgtctctctctgtgaacgTGTGTCGGTAAATCCGTCAGTATTGTCACTTTTGTGGGGGGAAATGGTGAGAGGACATCTAAATCAATCATCCTATCTATGACCTAcggacCAAGAAgaaacacacacggacacaggAAGGCTGTTTTCTCCACAGAGGACAGTCGCCAGTCAGTCCATTATTGGACACCAAGGCTGTCTGAGTGTTGGGAGGCATCAAGCCTGTTGTTGTGTATGGACTGCTGCTGCACTAAAACAGAGAGTCTAGCCTACCCCACGACCCCTCCAGTTCCCCTGGTCCCTACACCAGCCTCAGCTCTAGCCCATACAACTCCCTGCCCCCCTCTCCAACACTGAGCGATGCCCACCCACCTCCCTCagcctcttcctccctctccccttcctcctcctcctccatctccttccctctgtccatcTCAAACAGCTACACTTCTGGCATCAGTTCTGGATCTCAGGGGAACGTGGAGGGTAGCCCCTCCCATGGGGGTGCCCAGGGTCCTAACCCTGCTTCTTTGGAGGACCTGATCTGGCTCGCAGCGCTGCAGCAGCAGTTTGGAGGGGAGGCGGGGGGACCTGCGTCCCTGCTGGGAGGTGGGCCAGAgcggggagacagagaaagagggtcGGTCGGCAGCTTCCTGGGCTGTGAGGACGCTGTGGAGGCTCTACTGAACTCAGCTGCAGCAGCTGTTAACTCACAGTTCCCAGTGCTTTCCCAGAGTTCCAGCAGTAACCTGGGGGATTCGGGTAGTGACAGTGGAGGTGACATTTCCTGCGCCAATGGGACGGATATGTGTCATCGtccactcctctacctctcctctggccCTCAATTGCTCCCCAACACCAACCCCTCTTCAGCATCCTACCCACAACCCCAGAGCCCCTCTGACCGACTTCATCACCATCATCcacatcataatcatcatcaccaCCCGCACCACCCCATGCAtggccatcatcatcatcatcatcatcacctccaAGTAATTAATATGGTCAGGGGGCATGACAGTATGAAACAAAATATAGTAGAATAACCAAGATAAGAGAAACGAGAAGGCTAGCAACAGGCTAGCAACAACAGCGCCAGTACTGGATGGAGCAGGAGCatatgggagaggggagggagatgtgATAGAGGGATCATGCTGTAAAGGATTGGGATTAGAACATTAGAACATGATTAAGTGTGCATGCCGTGTACCTGCTATAAGTATAGAAAACATGCCTCTACTCTGAGATGACAATGAGTTTATCTGTAGACATTCCTTgtttaaaaatgcattgtttgTCCTGCAGGCAAGTACAGAATATTGGAGTAAATGTAATAAAGGGAGCAATAATTCTCCTTTTAATAGATACAAGCAATTGTACTACATCAACATTGATATATGAACTGTGTTAAAGCTAATACTTACTAGGCCACATCAATAACTCCAGGGctttgaattgatttgattttgattttcctCTAGCTGTTCTATGGTTGAAGGAGCTATGTGTGGGGCTGGTAATGCTATTGTTTATGGAATGTTCAGTACTGTTCTATATCTGCATTCTCCAACCAGGTGTCTGAGAGAATCTCTGTGCAGTATGTGGAGCACAGTGTGAGCTTATGATAATATCTGCTATTATTGCTGTGTATAACCCTGATTACTGTCACTTTCAATCAGTCAGATTATCTGACAGATTATGGACATGTGATACCGAAATGTGCCCCCTGACACACACAGCTAGGCACACTCTCACATCACGCACAGAACCACACATGCacaactcagacacacacacacaaacacacacacacacacacacacacacattgaaagtCAGTCAAAATGTTTTAAGTCCTATCTATTCTGCATAACCGTAATTCATGTCAACGTTCGGAAGTAaccatctctccctgtgtctgtgtgcagtGTGGTGGGGTAGATGAGCGTTTCTCAGACGAACAGCTGGTGAGCCTATCGGTGCGGGAGCTGAACAGACACCTGCGTGGCGTCAGTAAGGATGAGGTGGTGCGTCTCAAGCAGAAACGTCGTACGCTAAAGAATCGAGGCTATGCCCAGTCCTGTCGCTACAAACGCTTGCAGCACCGCCACGCACTGGAGTCTGAGAAACACGTCCTCACACAACAgTTGGAACAGCTGCAGTGTGAGCTATCTCGGGTGCTGAGGGAGAGGGACGCCTACAAGGCTCGCTACGAAAAGCTTGTCAGCACAAACGAGGCTCCACCTACCCACGCCAACAACCCCCCCTCACCACCACCTGACTACTTCCTCTGAGGACATACCCAGAGGAGAGGACATAAAAATTAACGGATGAGAGTGGGATAAATGAGCAGGTCAGCCTAAATAAGGCCAGCACTGGGAAATCAGTCtttgggaggaagggagggagggttgggggtgtgtgtgcgtgtgtggaggTTGTCAGGCAGGTAGTGGGGTTAGAACTAGGCCATATATGACTGTGAAATCAACCTGCTGAGCTGGCACTTGACTGTTAACTTAGGGTTAGAATCGAGCCCTAGATTGCTTCATAAACCGGACTAATGATGAAGACTTCAGTTTTGATATCACAGTGACGTTCATAGTAGCACAAAGACTCAATGAAACATCTTCAGGATGCATCCTGCACTGGTCAAATCAGGGCATGGAAGGTCACAGGTCATCCTCAAACTGAACAAACTCCATCGTAGCATTCATCAACCTTAACACTATCAACCTATCTATGCACATTTATTTCAAGCAGAACAAATTAAAAGATGAACTGATATCCAAACAATGGTTGGGTTGAATCCAGCCCCTGACATGCacactgtgatggtgtaggtTGACTGGGCTCATTGGAAACTCAAAGGTCTGAGTAGTGCTGTGGTATtggatgtgtagtggtgtatgaTCTTCAAGTGTCCATGGCATGCAGTTGTACTCGCCAGCAAATATTTCACAGTTGCCTACCAAGGTGTTTTTGCTCACCAAGACTTGTTACCCACTATCACATTTTTAAGATGAATAATCATAGAAAAATAATGTACAAGGATCCTTTTTCTGATGGAATTCCTGTGGTTGTGCTAAATGAAAAATTGACATAAACACTCATGTATAAAGTAGATACATAAAAAAAGACAAATTAAAACATATCCATACTTTGCTTGTtgaaaataacatacatttttgtcataATGACTATGAAGAATAATTGCAGTGTGCTATCTGTGATTCGTGAACGGACCTCCAAGAGACTTCTTCTGTCAACCTGTACTGTAGGATTTCCACAATCAATCAGTTGGCTCTAACATGTGAAACAAGAAACTGTGGTTGCTGCAGTTGTCGTCAAATAGGTCTGTACAAAGAACATCCCCCCCAAAAAGGCAACAGAGTGCTAAatggactgtgttactatgtttTGTCTTCAAGCTTTTATAATACAATCTAGGTTGTGCTGAAAACACTTTTGTAAGAGAGCGACAACCTTAATGCAACAAGCACCACAGAGCTGGACACTGTGGATTCTTAAAAAGTAGGGTGAAATGCAAGAAAATGTGGACATTCAAAGACAGACCAGCTCATGAAATGTTACCAGGGTAGCTACATTAGAGCTAATTGTTTTGGCTAGGTGTAGGTTCATTAATTGATTTATCTGTTTTATTTATTCACTTATTTATTCACAGTATTTATTAATTGTTTATTTATGTACCGATTATTATTACAATTTACAATTTATTACAATTTAATCTACAAGCTTAGTGTGTACTTTTATTTTCAAGCAGAATAAATCcacattttaattatttttttgatTATTTTCAATAGTATGACTACAATCATTATTGCAATCATGGTTGATGCTCCTACTGTAGTGTGGTTTCCTATGAAATAAAGACAATATTTTTATCAACCT

Function

NR:

description
PREDICTED: transcription factor MafA

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978405.1 False 2327 mRNA 0.51 4 75093618 75097169
XM_036978406.1 False 2456 mRNA 0.49 6 75093618 75099520
TU497163 False 572 lncRNA 0.38 2 75045027 75094005
TU497167 True 4107 lncRNA 0.45 5 75092873 75099305

Neighbor

gene id symbol gene type direction distance location
LOC101268909 LOC101268909 coding downstream 1985 75082466 ~ 75091633 (-)
LOC110524566 NA coding downstream 44193 75048445 ~ 75049425 (-)
LOC110524565 LOC106560282 coding downstream 57517 75026608 ~ 75036101 (-)
LOC110523004 NA coding downstream 125134 74961377 ~ 74968484 (-)
LOC110522887 LOC106560273 coding downstream 182269 74901557 ~ 74911349 (-)
LOC110524568 LOC106560284 coding upstream 12499 75112019 ~ 75148466 (-)
LOC110524570 LOC106560285 coding upstream 71757 75171277 ~ 75209062 (-)
LOC110524572 LOC105011858 coding upstream 120686 75220206 ~ 75230037 (-)
LOC118964646 NA coding upstream 125943 75225463 ~ 75228018 (-)
LOC110524573 LOC106560289 coding upstream 138021 75237541 ~ 75296608 (-)
G439076 NA non-coding downstream 93719 74993136 ~ 74999899 (-)
G439065 NA non-coding downstream 128481 74964761 ~ 74965137 (-)
G439012 exoc1 non-coding downstream 159276 74932171 ~ 74934342 (-)
G438951 NA non-coding downstream 247002 74844036 ~ 74846616 (-)
G439571 NA non-coding upstream 115243 75214763 ~ 75215003 (-)
G439574 NA non-coding upstream 132085 75231605 ~ 75232553 (-)
LOC110524574 LOC106560290 non-coding upstream 230880 75299095 ~ 75333476 (-)
G439653 NA non-coding upstream 248028 75347548 ~ 75351451 (-)
LOC110524577 LOC106560293 non-coding upstream 261618 75361138 ~ 75528550 (-)
G439002 NA other downstream 165821 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 1683279 73370439 ~ 73421683 (-)
G437079 NA other downstream 1946490 73146358 ~ 73147128 (-)
G437074 NA other downstream 1968580 73122112 ~ 73125038 (-)
G439594 NA other upstream 163953 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 471729 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1486938 76586458 ~ 76590370 (-)
G441483 NA other upstream 1802862 76902382 ~ 76902771 (-)
G441630 NA other upstream 1914479 77013999 ~ 77021375 (-)
LOC100135915 LOC106560272 coding downstream 153716 74848830 ~ 74891311 (-)
LOC118964644 kdr coding downstream 224720 74807206 ~ 74820307 (-)

Expression


Co-expression Network