LOC118964534 (LOC106560333)


Basic Information

Item Value
gene id LOC118964534
gene name LOC106560333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78315926 ~ 78318921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051591.1
TGGTTCTCTTAGAAAGTTAATTCAGATTGTTGTTTAAAATGGTAGACTATGTTATCAATCAAATTCAGATTTGTTTTAAAATCAATCAATGTTATCAGGTTCATCCCTTGTCTATCTCCACATCTTCTCTTTGGGTCATTTAAGTTCTCCTCCATTGGAAGTGAAGGAATTTAAGGACAGCTTGACGTAGTGGCTCTAGGAGTGTTTAGAACAGcccctcctccatcactctgATCCCTCCCTCCTCCGGGACCAGCCCCAACACTGGACCAAGCACCCCCTAGTCTACCACACCCACTGGCAAGACCACCCGCCGAAGCTTCTGGGAAATATTAAGCAATCAGACTCATCTGAGCTGGGGATCCCTCAGACGACAGACGACATCGTgcaggagaagggggaggagggtcgGACACGTAGGAGACACAAGACGGAGAACGTGAAGCAGCAGTGGAGCCAGGAGAGGTCCATGGCTGTAGGACTGGAGCAGGCCCAGAGGAGACGTGTCCCAGCTATAGGAAGGGAACGTTGGGACCCTACACCCTCTGTATCAGGTCACCTGTCAGCCCTGGATTATCTTCATGGCTAAAGTTGGATGCCCGTCCATTCAGCAGTGCACCGCTGATATTGCCTCCCAGTTCCTGCTTCCTCCCATCCTGACAGAGATTGTCAATCTGGTCAGCTCCCTGGCCAGTGACACCACTGTCAAAGTGTTCGAGAG

Function

NR:

description
PREDICTED: protein SZT2-like isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051591.1 True 721 mRNA 0.51 4 78315926 78318921

Neighbor

gene id symbol gene type direction distance location
LOC110524622 LOC106560333 coding upstream 27834 78245839 ~ 78288092 (+)
LOC118936475 LOC106560333 coding upstream 38624 78270127 ~ 78277302 (+)
LOC118964649 NA coding upstream 76925 78237895 ~ 78239982 (+)
LOC110524620 LOC106560332 coding upstream 87653 78126205 ~ 78228375 (+)
sec16b sec16b coding upstream 414864 77875620 ~ 77901062 (+)
LOC110523011 LOC106560333 coding downstream 11147 78330068 ~ 78344913 (+)
LOC110524625 LOC106560333 coding downstream 39164 78358085 ~ 78379665 (+)
ptprfa ptprf coding downstream 323461 78642382 ~ 79041656 (+)
LOC110523012 kdm4a coding downstream 723443 79042364 ~ 79061364 (+)
st3gal3a st3gal3 coding downstream 743268 79062189 ~ 79141985 (+)
G442934 NA non-coding upstream 15925 78297768 ~ 78300001 (+)
G442919 NA non-coding upstream 80491 78234783 ~ 78235435 (+)
G442917 NA non-coding upstream 81295 78232924 ~ 78234631 (+)
G442942 NA non-coding downstream 6733 78325654 ~ 78325872 (+)
G442943 NA non-coding downstream 8083 78327004 ~ 78327235 (+)
G442947 NA non-coding downstream 10687 78329608 ~ 78329833 (+)
G442922 NA non-coding downstream 18653 78337574 ~ 78337883 (+)
G442961 NA non-coding downstream 20380 78339301 ~ 78339513 (+)
G442273 NA other upstream 732699 77558330 ~ 77583227 (+)
G441903 NA other upstream 1047160 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 3137639 75161317 ~ 75178287 (+)
G438719 NA other upstream 3539457 74772009 ~ 74776469 (+)
G445204 NA other downstream 1897557 80216478 ~ 80217090 (+)
G445211 NA other downstream 1915959 80234880 ~ 80235428 (+)
G446381 NA other downstream 3576883 81895804 ~ 81897781 (+)
G447001 NA other downstream 4105277 82424198 ~ 82442223 (+)
G447020 NA other downstream 4133685 82452606 ~ 82458383 (+)

Expression


Co-expression Network