G447020


Basic Information

Item Value
gene id G447020
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 82452606 ~ 82458383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU505834
agagaaagagagtagatggggatagaagagagagggagagagagagagagagaaccagaaagagaaagagagaggggaagatggggagagagagaaccagaaagagaaagagagaggggaagacggggatagaagagagagagatagagagggaaagatggggagagagagagactaccacACAAGACAATTCCAGACATGTGTAAATACCAGAGGTCTCcaggaaagagcgagagacaagTGTGTGTTCTACGTCAGAGGGGGAAGAGTGGTCTCAGAGAACCTCAGGATGGATTGAGATAACACTAAATAAACACAGAGAAGGAATGACGGAAAAATTAAGACTTAAAAAGATAAAGCAGAAGACAGTCAAACTAAAGATACCAAAAGACTGGAAAAGAAAGAGGCAAAAAGAGACAtgcaaaaagagacaggcaaaaagagacatgCAAAAAGAGACAtgcaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacatgcaaaaagagacatccaaaaagagacaggcaaaaagagacatgCAAAAACagacatccaaaaagagacaggcaaaaagagacatgcaaaaagagacaggcaaaaagagacatccaaaaagagacaggcaaaaagagacatccaaaaagagaca
>TU505835
agagaaagagagtagatggggatagaagagagagggagagagagagagagagaaccagaaagagaaagagagaggggaagatggggagagagagaaccagaaagagaaagagagaggggaagacggggatagaagagagagagatagagagggaaagatggggagagagagagactaccacACAAGACAATTCCAGACATGTGTAAATACCAGAGGTCTCcaggaaagagcgagagacaagTGTGTGTTCTACGTCAGAGGGGGAAGAGTGGTCTCAGAGAACCTCAGGATGGATTGAGATAACACTAAATAAACACAGAGAAGGAATGACGGAAAAATTAAGACTTAAAAAGATAAAGCAGAAGACAGTCAAACTAAAGATACCAAAAGACTGGAAAAGAAAGAGgcaaaaagagacatccaaaaagagacaggcaaaaagagacatccaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacatccaaaaagacacaggcaaaaag
>TU505837
agagaaagagagtagatggggatagaagagagagggagagagagagagagagaaccagaaagagaaagagagaggggaagatggggagagagagaaccagaaagagaaagagagaggggaagacggggatagaagagagagagatagagagggaaagatggggagagagagagactaccacACAAGACAATTCCAGACATGTGTAAATACCAGAGGTCTCcaggaaagagcgagagacaagTGTGTGTTCTACGTCAGAGGGGGAAGAGTGGTCTCAGAGAACCTCAGGATGGATTGAGATAACACTAAATAAACACAGAGAAGGAATGACGGAAAAATTAAGACTTAAAAAGATAAAGCAGAAGACAGTCAAACTAAAGATACCAAAAGACTGGAAAAGAAAGAGGCAAAAAGAGACAtgcaaaaagagacaggcaaaaagagacatgCAAAAAGAGACAtgcaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacatgcaaaaagagacatccaaaaagagacaggcaaaaagagacatgCAAAAACagacatccaaaaagagacaggcaaaaagagacatgcaaaaagagacaggcaaaaagagacatccaaaaagagacaggTAAAAAAGAGACATGGaaaaagagacatccaaaaagagacatccaaaaagagacaggcaaaaagagacatctaacgctaaccaaggttgccaggtgcacagtttttcctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagc
>TU505836
aaaagagacaggcaaaaagagacatccaaaaagagacatccaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacagacaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcaaaaagagacagacaaaaagagacaggcaaaaagagacaggcaaaaagagacaggcAAAAAGAGACATGGaaaaagagacatccaaaaagagacatccaaaaagagacaggcaaaaagagacatctaacgctaaccaaggttgccaggtgcacagtttttcctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU505834 False 671 TUCP 0.42 3 82452606 82457616
TU505835 False 554 lncRNA 0.43 2 82452606 82454601
TU505837 False 808 TUCP 0.43 3 82452606 82458383
TU505836 True 356 lncRNA 0.44 3 82453701 82458383

Neighbor

gene id symbol gene type direction distance location
igfbp1a LOC101268901 coding upstream 232110 82218472 ~ 82220496 (+)
LOC118936420 LOC106560395 coding upstream 302897 82141784 ~ 82149709 (+)
LOC118964728 LOC106560395 coding upstream 311106 82139830 ~ 82141500 (+)
LOC110523017 LOC105011947 coding upstream 322095 81932984 ~ 82130511 (+)
LOC110523016 LOC106560408 coding upstream 532100 81892826 ~ 81920506 (+)
LOC110523018 LOC106560398 coding downstream 83154 82541537 ~ 82600595 (+)
c5h8orf82 cssa10h8orf82 coding downstream 147773 82606156 ~ 82629774 (+)
naprt naprt coding downstream 174150 82632533 ~ 82660203 (+)
LOC110523019 LOC106560399 coding downstream 208812 82667195 ~ 82739466 (+)
rhpn1 rhpn1 coding downstream 288950 82747333 ~ 82775237 (+)
G447012 NA non-coding upstream 18082 82433217 ~ 82434524 (+)
G446999 NA non-coding upstream 37395 82414847 ~ 82415211 (+)
G446998 NA non-coding upstream 38421 82413926 ~ 82414185 (+)
G446994 NA non-coding upstream 44612 82407754 ~ 82407994 (+)
G446987 NA non-coding upstream 57874 82394458 ~ 82394732 (+)
G447036 NA non-coding downstream 12080 82470463 ~ 82482921 (+)
G447039 NA non-coding downstream 25276 82483659 ~ 82483911 (+)
G447060 NA non-coding downstream 60894 82519277 ~ 82530804 (+)
G447075 NA non-coding downstream 81233 82539616 ~ 82540228 (+)
G447001 NA other upstream 10383 82424198 ~ 82442223 (+)
G446381 NA other upstream 554825 81895804 ~ 81897781 (+)
G445211 NA other upstream 2217178 80234880 ~ 80235428 (+)
G445204 NA other upstream 2235516 80216478 ~ 80217090 (+)
LOC110524622 LOC106560333 other upstream 4194150 78245839 ~ 78288092 (+)
LOC110524684 NA other downstream 1330635 83788574 ~ 83794357 (+)
G448698 NA other downstream 1843717 84302100 ~ 84302473 (+)
LOC118964674 NA other downstream 1929710 84386803 ~ 84389601 (+)
G449774 NA other downstream 2870189 85328572 ~ 85328942 (+)
G449809 NA other downstream 2987581 85445964 ~ 85447575 (+)

Expression


Co-expression Network