LOC118964650 (LOC106581256)


Basic Information

Item Value
gene id LOC118964650
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80192385 ~ 80197919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978496.1
cgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGACGAAACTGACTCACCCAAGAGGGGTGGCAGTGCAAGATCCTTTGCTGCCTTTGATCAGGAAAGActggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGttcccagacctcagtgaaagtcctcctgggaatgacagaggacagaatcatcaaaagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATCAAGGTGGTGGTCGAACAGCTTAACTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGGTCATCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACACCACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGAGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATGGAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCAACCATTACTGTCTCTCTGGGATTCCAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTCCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagagccttttcccacccacagagtcttctactactctatggcaggcagactctatgcttcaacagagtgatgagaaaacctcagagtacactgaggccacacccaaaggctcacagtctggtttggaagtatctgagaagaagatctggacaactgcaaatactatttaccacaatgtgaagacaaagatgaggaattattttacatggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggtttcaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTAACAGCTGCGATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcttccgatacagtccttactgagctgaagaggaatgacaagaCGGTGGGGAAGCCCACAGCTTACAAGCTGGTTCAGCTTTTTGCAGAGGAGTCTGTGAAGCGCCTCTTGCTTCCTAGCCTTATGCCCTCTACAGcttcaatgagtttggctcagggagttagtgtgccggctagcgtatctgaagataggatttcatgttctttttctacatcagcatttagtgacacagtcagcctgtttaccaaagtaatggtaagccaggtcatggactctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGCCTTTGTCTTCATTTGTGTTGCCCTGTTAACACATTTGATTAGAAAATACATAgtatatttagtttagtttattatgcAGTCAGAGTCACGGTGTAGGCTAAACAAAGTAATGTTGTCCTGAATAATGTATAGAACATgcacccccacccacacacacacaaacagtgtgattcattgaacacacacacatagtacttCAGTTATGTCCCACAACCAACATTCGACCAGATATCAATGATtcagtgtaaaatacatgtactgtaaaataaaccgtatttaatttacaaccaataaaataatacatgatgcaggacactcagttataagggaattaactggtttaacttctcaaacagaaacacacacatttccattttctgtggatcgcccatgtttacattttactgaatgccagtctgacctttgacctgtagATGACAATAAAGGTCTACTTTTGCTGCAGATCCACTTCTAAAGCTCAAACCTCTCTGGACAAGTAGCCAAAACATTTGTCCCTagtgagagagagtatgtgtgtgtggcaaaaaagggaatattgcactacacttttatgatacagatacattttgcattcggtagcatagcacagctgtagttttttcaaatgccaaatgtacatgtagcatgcttctgcctACAGATGCTTTTCTGAGTGACTTGTGTTGTGAGAGAACCAGAATTCAAACATAAACTCCTGGATTACATTTTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106581256

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978496.1 True 4835 mRNA 0.45 4 80192385 80197919

Neighbor

gene id symbol gene type direction distance location
LOC110524643 LOC106560384 coding downstream 25642 80075696 ~ 80166743 (-)
b4galt6 LOC106560385 coding downstream 176142 79988126 ~ 80016243 (-)
LOC110524638 LOC106560389 coding downstream 295646 79865177 ~ 79896739 (-)
LOC118964535 NA coding downstream 585560 79536584 ~ 79606825 (-)
cdh2 LOC106560349 coding downstream 732878 79385540 ~ 79459507 (-)
LOC118964651 LOC106581256 coding upstream 10493 80208412 ~ 80210788 (-)
LOC118964652 LOC106581256 coding upstream 13265 80211184 ~ 80213484 (-)
LOC118964653 LOC106581256 coding upstream 25321 80223240 ~ 80233361 (-)
LOC118964655 LOC106581256 coding upstream 43080 80240999 ~ 80244648 (-)
LOC118964723 NA coding upstream 49774 80247693 ~ 80264560 (-)
G445191 NA non-coding downstream 19764 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 20352 80171543 ~ 80172033 (-)
G445174 NA non-coding downstream 39653 80152398 ~ 80152732 (-)
G445173 NA non-coding downstream 42219 80149920 ~ 80150166 (-)
G445152 NA non-coding downstream 118671 80073434 ~ 80073714 (-)
G445202 NA non-coding upstream 3031 80200950 ~ 80201243 (-)
G445206 NA non-coding upstream 22719 80220638 ~ 80220893 (-)
G445217 NA non-coding upstream 44667 80242586 ~ 80242951 (-)
LOC118964724 NA non-coding upstream 107168 80282518 ~ 80308754 (-)
G445225 LOC106581256 non-coding upstream 113681 80311600 ~ 80311884 (-)
G445197 NA other downstream 15305 80176762 ~ 80177080 (-)
G445115 NA other downstream 204681 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 460849 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 954924 79219153 ~ 79237461 (-)
G444001 NA other downstream 1226356 78964631 ~ 78966029 (-)
G445220 NA other upstream 48024 80245943 ~ 80261505 (-)
G446775 NA other upstream 1745366 81943285 ~ 81943611 (-)
G447220 NA other upstream 2192736 82390655 ~ 82391224 (-)
G447993 NA other upstream 3119594 83315161 ~ 83319715 (-)

Expression


Co-expression Network