LOC110524635 (LOC106560345)


Basic Information

Item Value
gene id LOC110524635
gene name LOC106560345
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79219153 ~ 79237461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604478.2
ATATAGCGCATGCGCTCTGCCTGAGGACTGCTACACAGACTGCAATATGGCGAGAATGCCTGGCAGCGCAGACTGCTCTAGCGACACGGCGGGGACAGAGCGGGTGGAGCACATGAGCTGCCCAGAGACTGAGAGGAGCGGAGACGAGGCGGAAGAGGATGAGATCCAGGAGGTGCAGATCACCGGCGAGGAGGAGGGGGAGTACGAGGAGGATGTCGAGCTGGAGTGGGAGGCAGAATGTGTGGACCCCGGCAGCTGCTCGGTTATGGAGACAGAAGCGGTCCGTATGGGCAGTACGGACCAGTGCAGCGGGATGGGAGCGGGGGCGGACCCCAGACTTTTCCACATCCCCGGACTGGACTCGGATCCGGAGGGAGACCTGCAGCGGTCTGACCGCTCCAGACTGAGCGAGAACACTCGCCTGGCTACTAGGTACGCAGTCAGGATCTTCCGGGAGTACCTGAGTGAGAAAGCCCAAAGTCCTGACTTTGAAACTCTGGACAAGGAAGCGCTGTGCGCGGTCCTGCGCTCCTTCTACGCGGAGGCGCGATCGAAGAGTGGCCAGCTCTACAGCAAGTCCTCTCTCATCAGCATCCGGAGTTCTCTGAACCGCTACCTGAATGAGCCGCCTTACTGTCGCACCCTGGACCTCACCAAGGACCCAGAACTGCGCAGCGCCAACCTGACCCTGGCCGCAGTCATCAGAAAGCTGGAGGAGCAAGGTGCCGGTCCCGTTGTGCAAAAACAGGCTATTACGCGGGCGGACCTGAGAAAACTCTACACCTCTAGTGTGTTTAACACCGATACGCCGTTCGGGCTTCTCAACAAAGTGTGGTTCGAGACATGTATGTATTTCTgcacgagggggagagagaatcaGCGCGAGCTGGAGGAGGATTCATTCGGGCTAGCCATAGACGAGGATGGGAGAAAGTTTATCTATTTCAAAGCGCTGGGGCCGTATCACAAGTCTCGCTCGGCGTCCTGGACTAAAAAAAGACCAGACACGGATGATGATACTCTGCCGCGCATGTATGAGACGGCCACGGAGTTTTGTCCGTATGCCAGCTTTGTGAAGTATGTCTCGAAACGGAACCCGCTGTGCAAAGCGTTCTTCCAGCGCCCGCGAGACCACTGCTGCTTAAGCGACATGACATGGTACGAGAACAAAGCAATCGGTAAAAACCTGCTGGGCACGAGGATGCAGATGCTGTCGCGTGCTGCCAAGCTTTCAAAGACCTACACCAACCACTGCATCGGCGCAGTCTCCATAGCAACGCTCAACAGCATCGCTGGTATCGGGTCAAAGTCAGTATCGCTTCACGTTGCCTCGGAAACGGTCAATGGTGGCGCACAGTCTTATCTCCAGCTCGTGATCCCTTATAGCCGACAGGTCACGGACGCAGTGGAACTGAAGCCGCAGAGAACGACAAGGAAATGTCGTTCTCACTGCCCCGGCGACGTCTCTGGACCTCCATCACCTAAGAAGCTCTGTGTGCGTTCCGAGGAACGCGGAGAGTCCCCGGTGGTCATAGTGGACGGTACCGAGCCCGTGGACACCCGAGCCCCGGAGCCCCACGGCCAGCCGCCCGCTCCTTTACCAGCTGGCGTGGTAGCAGCGCAGgATAGCCGTAATAGCAGCATGGCCAGCCGGccactggtctcccagtcccctGCCTCTCCGCTGGGCTCAGGGGGTATAGGGGGCATCCCCACCCCCGCCCAGCTCACCAAAACCAACGCCCCTGTACACATAGACGTAGGAGGTCACATGTACACCAGCAGCCTGGCGACACTGACCAAGTACCCAGAGTCACGGATTGGTCGTCTGTTCAACGGGACAGAGCCCATAGTGTTGGACAGTCTGAAGCAGCACTACTTCATAGACCGAGACGGTCACATGTTCCGCTACATCCTCAACTTCCTGCGGACGGCAAAACTGCTCGTCCCTGACGACTTCAAAgagTACTCTCTACTCTATGAGGAGGCCAGGTTCTTCCAGCTATCTCCACTACAAGCAGAATTAGAACGCTGGAGGAGTGAGCGCGAGGCCAGGAAGgtgtggcgtgtgtgtgagtgtgtggtggtgCGTGTAGCTCCAGAGCTGGGGGAGAGGATCACTCTAAGTGGGGACAGGGCTCTGATCGAGGAGGTGTTTCCAGAGGTCGGGGACGTCATGTGTAACTCCCTGAACGCAGGCTGGAATCATGACTCTACTCACGTCATACGCTTCCCACTCAACGGATACTGTCACCTCAACTCTGTACAGGTGTTGGAGAGGTTGCAACAGAGAGGATTCGAGATAGCAGGGGCGTGTGGCGGGGGAGTAGACTCCTCCCAGTTCAGCGAGTACGTCCTACGCAGGGAGGGAAGTAGCAACGGACAGCGTGGCCACACCCTCATCCGCATCAAACAGGAAGCACTGGACTAAGCCCGACCCAGGTCAgatcagaggtcaggggtcagtggATAATTGGTCAGGAGAATCCAGAAAGCGACGCCTCCATCTCCAAGGGAACGCCAATAGTTGTTTTAGAATTTTGTGGACATAGGTATTGCCATGATGAAACGGTGATTGTACCTACACCAAAGGAGAGCAATAGAACTATGACCTCACCGCAATGAACTATGGAAGTCACTAACCAGGCGGTACGCAGATAGTGACTGACCCCTCTCCCCATGAGCAGGGACCTATAGCATAGAGAGAAGCAACATTAGCACTATCATCATACTACTCATGTTACCGTGTAGGATTATTCTGTTTTATAGTGTCATAATAATACTATGTGGATTCATTAAGATTCTTACAATAATGTAAATAATCACATAATGGGATGAGGTCATGACTGAAACTCTGAAATGGAGAAACGACACTAATGAACATGGACGATTTGCAGCTGAATGTTAAAAAGCACAAGTGTCTGGGAAATCTAACCCAGCCTAAACTAAATAGATGAAATATATGGTTCTGTGAAGCTAAAGTTATTACGAGGAACTCGTGgaagttttttttgttgttgaaattttTATAAACCAAAAATATGGTTTTCACATGTTAAGTCTTAATATTATGACAATGGAATTCTGAAGAGGTTCTTCTACACTTTATATTCAGCACAATGATAAAAGAGATTTGTCTTGTCAGAGATTGAATTGTTGCATGTTTTATGCTGAGCATTTGAGCAGCAGAGGACTTGAGATCTGTATCAAAACTGTCTGTCACACTAAAGGAAATTTGATTTCATAAACGAATGTACCAAAAGGATGTAAAAACATGTTTCATACAAAAAAaagtctgcatgtgtgtgtgtctattagtTATTCAGGAAACTGTAAATGAGAATATTCACTAAAATGTTCATTTTAGTTAGGCTAGCAATCACAGATCAGATGACAAACCTACCATCACCGTATAATTGAAACCGGAAAGTTAAGGGAGAGGTTTGCATTAATTTTAGGTGGCATGGTAAATATTCCACCTGCTTCAGAGTTTAGCAGAAAGTAGTTAATGAATATCTATAAGCAATGCATGAATATTAAGTACACTAAAGTGCCTTTGTCTTCCTGGATTTGACAAGCTGTCAGAGGGAGGGGCTTGTCTTTGATCTGAGACAGGAACAGGAAGCAGTGGGACATATGATGAGCTTGTTAACGTTGCCGACGATGATCAA
>TU502677
gtgagtgtgtggtggtgCGTGTAGCTCCAGAGCTGGGGGAGAGGATCACTCTAAGTGGGGACAGGGCTCTGATCGAGGAGGTGTTTCCAGAGGTCGGGGACGTCATGTGTAACTCCCTGAACGCAGGCTGGAATCATGACTCTACTCACGTCATACGCTTCCCACTCAACGGATACTGTCACCTCAACTCTGTACAGGTGTTGGAGAGGTTGCAACAGAGAGGATTCGAGATAGCAGGGGCGTGTGGCGGGGGAGTAGACTCCTCCCAGTTCAGCGAGTACGTCCTACGCAGGGAGGGAAGTAGCAACGGACAGCGTGGCCACACCCTCATCCGCATCAAACAGGAAGCACTGGACTAAGCCCGACCCAGGTCAgatcagaggtcaggggtcagtggATAATTGGTCAGGAGAATCCAGAAAGCGACGCCTCCATCTCCAAGGGAACGCCAATAGTTGTTTTAGAATTTTGTGGACATAGGTATTGCCATGATGAAACGGTGATTGTACCTACACCAAAGGAGAGCAATAGAACTATGACCTCACCGCAATGAACTATGGAAGTCACTAACCAGGCGGTACGCAGATAGTGACTGACCCCTCTCCCCATGAGCAGGGACCTATAGCATAGAGAGAAGCAACATTAGCACTATCATCATACTACTCATGTTACCGTGTAGGATTATTCTGTTTTATAGTGTCATAATAATACTATGTGGATTCATTAAGATTCTTACAATAATGTAAATAATCACATAATGGGATGAGGTCATGACTGAAACTCTGAAATGGAGAAACGACACTAATGAACATGGACGATTTGCAGCTGAATGTTAAAAAGCACAAGTGTCTGGGAAATCTAACCCAGCCTAAACTAAATAGATGAAATATATGGTTCTGTGAAGCTAAAGTTATTACGAGGAACTCGTGgaagttttttttgttgttgaaattttTATAAACCAAAAATATGGTTTTCACATGTTAAGTCTTAATATTATGACAATGGAATTCTGAAGAGGTTCTTCTACACTTTATATTCAGCACAATGATAAAAGAGATTTGTCTTGTCAGAGATTGAATTGTTGCATGTTTTATGCTGAGCATTTGAGCAGCAGAGGACTTGAGATCTGTATCAAAACTGTCTGTCACACT
>TU502678
aaaaggTATAAACGGAATCCAGAATAATGTTCATTTGATATGATGCAGGAATACGATAATTGTCTCCTGATCTTAGCCTGAGGGGCTAGTGGAGCCTTGGAGCGACTGTTCTGTCTTCCGTCCATCGCCAGGCTAATGCATTTCTCTGTAGCGTGCCGGGGAAGCAGCATACCGCCGTTTTTCAGAGAGAAAAGCCGATGATTGATGTCGGATGTTTCAGgATAGCCGTAATAGCAGCATGGCCAGCCGGccactggtctcccagtcccctGCCTCTCCGCTGGGCTCAGGGGGTATAGGGGGCATCCCCACCCCCGCCCAGCTCACCAAAACCAACGCCCCTGTACACATAGACGTAGGAGGTCACATGTACACCAGCAGCCTGGCGACACTGACCAAGTACCCAGAGTCACGGATTGGTCGTCTGTTCAACGGGACAGAGCCCATAGTGTTGGACAGTCTGAAGCAGCACTACTTCATAGACCGAGACGGTCACATGTTCCGCTACATCCTCAACTTCCTGCGGACGGCAAAACTGCTCGTCCCTGACGACTTCAAAG
>TU502679
AAAACTCTACACCTCTAGTGTGTTTAACACCGATACGCCGTTCGGGCTTCTCAACAAAGTGTGGTTCGAGACATGTATGTATTTCTgcacgagggggagagagaatcaGCGCGAGCTGGAGGAGGATTCATTCGGGCTAGCCATAGACGAGGATGGGAGAAAGTTTATCTATTTCAAAGCGCTGGGGCCGTATCACAAGTCTCGCTCGGCGTCCTGGACTAAAAAAAGACCAGACACGGATGATGATACTCTGCCGCGCATGTATGAGACGGCCACGGAGTTTTGTCCGTATGCCAGCTTTGTGAAGTATGTCTCGAAACGGAACCCGCTGTGCAAAGCGTTCTTCCAGCGCCCGCGAGACCACTGCTGCTTAAGCGACATGACATGGTACGAGAACAAAGCAATCGGTAAAAACCTGCTGGGCACGAGGATGCAGATGCTGTCGCGTGCTGCCAAGCTTTCAAAGACCTACACCAACCACTGCATCGGCGCAGTCTCCATAGCAACGCTCAACAGCATCGCTGGTATCGGGTCAAAGTCAGTATCGCTTCACGTTGCCTCGGAAACGGTCAATGGTGGCGCACAGTCTTATCTCCAGCTCGTGATCCCTTATAGCCGACAGGTCACGGACGCAGTGGAACTGAAGCCGCAGAGAACGACAAGGAAATGTCGTTCTCACTGCCCCGGCGACGTCTCTGGACCTCCATCACCTAAGAAGCTCTGTGTGCGTTCCGAGGAACGCGGAGAGTCCCCGGTGGTCATAGTGGACGGTACCGAGCCCGTGGACACCCGAGCCCCGGAGCCCCACGGCCAGCCGCCCGCTCCTTTACCAGCTGGCGTGGTAGCAGCGCAGGAATGTCCTCACCTGTCTCACCTGGAACC

Function

NR:

description
uncharacterized protein LOC110524635 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604478.2 False 3671 mRNA 0.51 5 79219153 79226639
TU502677 False 1154 lncRNA 0.44 2 79219598 79222870
TU502678 False 560 TUCP 0.54 3 79223140 79237461
TU502679 True 882 TUCP 0.56 2 79224003 79225868

Neighbor

gene id symbol gene type direction distance location
hyi hyi coding downstream 832086 78383005 ~ 78387067 (-)
LOC110524621 med8 coding downstream 973323 78239768 ~ 78245830 (-)
glulb LOC106560331 coding downstream 1231498 77983744 ~ 77987655 (-)
znf648 LOC106560330 coding downstream 1280152 77914925 ~ 77939001 (-)
gadd45ab LOC106560326 coding downstream 1344310 77871765 ~ 77874843 (-)
LOC118964722 LOC106584191 coding upstream 16608 79243247 ~ 79282591 (-)
LOC118964780 NA coding upstream 67620 79294259 ~ 79294385 (-)
cdh2 LOC106560349 coding upstream 158901 79385540 ~ 79459507 (-)
LOC118964535 NA coding upstream 309945 79536584 ~ 79606825 (-)
LOC110524638 LOC106560389 coding upstream 638538 79865177 ~ 79896739 (-)
G444149 NA non-coding downstream 1654 79217282 ~ 79217499 (-)
G444145 NA non-coding downstream 5464 79213320 ~ 79213689 (-)
G444144 NA non-coding downstream 6095 79212845 ~ 79213058 (-)
G444143 NA non-coding downstream 7346 79211600 ~ 79211807 (-)
G444142 NA non-coding downstream 8582 79210362 ~ 79210571 (-)
G444167 NA non-coding upstream 26518 79253157 ~ 79253613 (-)
G444170 NA non-coding upstream 32666 79259305 ~ 79260230 (-)
G444235 NA non-coding upstream 126211 79352850 ~ 79353065 (-)
G444238 NA non-coding upstream 127529 79354168 ~ 79354403 (-)
G444318 NA non-coding upstream 154603 79381242 ~ 79381457 (-)
G444001 NA other downstream 253124 78964631 ~ 78966029 (-)
G442807 NA other downstream 1137143 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 1591939 77623299 ~ 77627214 (-)
G442115 NA other downstream 1812018 77406742 ~ 77407135 (-)
G441630 NA other downstream 2197778 77013999 ~ 77021375 (-)
G444691 LOC106605670 other upstream 504348 79730987 ~ 79731536 (-)
G445115 NA other upstream 755822 79982461 ~ 79987704 (-)
G445197 NA other upstream 950123 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 998836 80223240 ~ 80233361 (-)
G445220 NA other upstream 1019304 80245943 ~ 80261505 (-)
LOC110524635 LOC106560345 other upstream 270 79219153 ~ 79237461 (-)

Expression


Co-expression Network