G442381 (rpl5)


Basic Information

Item Value
gene id G442381
gene name rpl5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77623299 ~ 77627214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU500657
ATATTCTTTTTCTAAAGATTTATTAGAACAAAGAATTGTCCCTACATCATTAGGACCAGAGTTTAGCTGTCGGCAGCCTCCTGTTCCTGAGCCCTGAGGAAGCTGGCCTTCTTCTGAGCAACGCGGTCTTTCCTCTGGGCCAGAGAGAGCTTGGCACGGTTCCACCTCTTCTTCTTGACTTCTTTCTTGGGCTTCTTTTCGTGGACTGGGTTGTTACGAATGCCAGCATGGGCCTTTTTGTACATCTCCTGACCGTGTCAGGGGCAACGCCATTCTTGATGAAGCGAGAGAACTGCTTCTTGTATGcgtcctcatcctcctccatcaGATAGCTCATGTACTCAGACACATTGACACCCATGATGTGCTTGCGGTGGACCTCTGCATTGAACTCTTTGCTCTCCGCATCATATCCAGGGAAGCGCTTAGCTGTGGGGGATGGACAGGCCTCCATCCACAGCCCCCTTCAGGGCTCCGAAAACCTTGTTGCCAGTGCTGGTTCTGGCGAGCCCTGCATCCAGGTAGCAGGTGAATGCACCTGGCTGACCGTCGATGCTCTCCACGTTGAACTCATCTCCAGTGACCTCCACCTGTCCCTCGTACACCTTGTCCAGGCCGAACTTGTTCAGCAGCCTGCGGGCCAGCAGCAGACCAGTGCAGTAGGCTGCTGCGTAGTTAGTCAGACCAACGGCGATCCCGTACTTGGGCAGCTCGTGGGAGTAGGCAGCGCACACGATCATGTCCCCCTCGATCTTGGCATAGGCAATCTGAAGCTGGCAGACGATATCCCGGTTGGAGAAGCGGACAATCATCCTGTATTTGGGTGTGTTGTACTTGTTCTTATCTTGGATGACCAGGCGCTTACGGGCGAAGTAGTCCGTCTTTCCCTCTATGCAGAACAAGGATACCAAAGTCAGT
>TU500660
ATATTCTTTTTCTAAAGATTTATTAGAACAAAGAATTGTCCCTACATCATTAGGACCAGAGTTTAGCTGTCGGCAGCCTCCTGTTCCTGAGCCCTGAGGAAGCTGGCCTTCTTCTGAGCAACGCGGTCTTTCCTCTGGGCCAGAGAGAGCTTGGCACGGTTCCACCTTCTTCTTCTTGACTTCTTTCTTGGGCTTCTTTTCGTGGACTGGGTTGTTACGAATGCCAGCATGGGCCTTTTTGTACATCTCCTGAACCGTGTCAGGGGCAACGCCATTCTTGATGAAGCGAGAGAACTGCTTCTTGTATGcgtcctcatcctcctccatcaGATAGCTCATGTACTCAGACACATTGACACCCATGATGTGCTTGCGGTGGACCTCTGCATTGAACTCTTTGCTCTCCGCATCATATCCAGGGAAGCGCTTAGTCTGTGGGGGATGGACAGGCCTCCATCCACAGCCCCCTTCAGGGCTCCGAAAACCTTGTTGCCAGTGCTGGTTCTGGCGAGCCCTGCATCCAGGTAGCAGGTGAATGCACCTGGCTGACCGTCGATGCTCTCCACGTTGAACTCATCTCCAGTGACCTCCACCTGTCCCTCGTACACCTTGTCCAGGCCGAACTTGTTCAGCAGCTGCGGGCCAGCAGCAGACCAGTGCAGTAGGCTGCTGCGTAGTTAGTCAGACCAACGGCGATCCCGTACTTGGGCAGCTCGTGGGAGTAGGCAGCGCACACGATCATGTCCCCCTCGATCTTGGCATAGGCAATCTGAAGACGATATCCCGGTTGGAGAAGCGGACAATCATCCTGTATTTGGGTGTGTTGTACTTGTTCTTATCTTGGATGACCAGGCGCTTACGGGCGAAGTAGTCCGTCTTTCCCTCTATGCAGAACAAGGATACCAAAGTCAGT

Function

symbol description
rpl5 Enables RNA binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. A structural constituent of ribosome. Involved in several processes, including protein stabilization; regulation of cellular protein metabolic process; and ribosome biogenesis. Located in cytosolic ribosome; endoplasmic reticulum; and nuclear lumen. Part of ribonucleoprotein complex. Implicated in Diamond-Blackfan anemia 6; T-cell acute lymphoblastic leukemia; and glioblastoma.

NR:

description
60S ribosomal protein L5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500657 False 918 TUCP 0.53 6 77623299 77627214
TU500660 True 913 lncRNA 0.53 6 77623299 77627214

Neighbor

gene id symbol gene type direction distance location
LOC110524608 evi5 coding downstream 5588 77558322 ~ 77617711 (-)
LOC110524607 LOC106560317 coding downstream 66431 77548860 ~ 77556868 (-)
LOC110524605 LOC106560313 coding downstream 95438 77515118 ~ 77527861 (-)
LOC110524600 tgfbr3 coding downstream 220389 77276905 ~ 77402910 (-)
LOC110524597 LOC106560308 coding downstream 407388 77181914 ~ 77215911 (-)
LOC110524609 fam69a coding upstream 243 77627457 ~ 77642149 (-)
gadd45ab LOC106560326 coding upstream 244551 77871765 ~ 77874843 (-)
znf648 LOC106560330 coding upstream 298001 77914925 ~ 77939001 (-)
glulb LOC106560331 coding upstream 356530 77983744 ~ 77987655 (-)
LOC110524621 med8 coding upstream 612554 78239768 ~ 78245830 (-)
G442253 NA non-coding downstream 89573 77533518 ~ 77533726 (-)
G442209 NA non-coding downstream 138871 77484191 ~ 77484428 (-)
G442191 NA non-coding downstream 153461 77469618 ~ 77469838 (-)
G442173 NA non-coding downstream 167724 77454912 ~ 77455575 (-)
G442458 NA non-coding upstream 60171 77687385 ~ 77687686 (-)
G442461 NA non-coding upstream 64456 77691670 ~ 77691898 (-)
G442475 NA non-coding upstream 79786 77707000 ~ 77707258 (-)
G442488 NA non-coding upstream 104610 77731824 ~ 77732396 (-)
G442620 NA non-coding upstream 131608 77758822 ~ 77833545 (-)
G442115 NA other downstream 216164 77406742 ~ 77407135 (-)
G441630 NA other downstream 601924 77013999 ~ 77021375 (-)
G441483 NA other downstream 720528 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 1032929 76586458 ~ 76590370 (-)
G439788 LOC106560295 other downstream 2047730 75571249 ~ 75575569 (-)
G442807 NA other upstream 454531 78081745 ~ 78082010 (-)
G444001 NA other upstream 1337417 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1595926 79219153 ~ 79237461 (-)
G444691 LOC106605670 other upstream 2103773 79730987 ~ 79731536 (-)
G445115 NA other upstream 2355247 79982461 ~ 79987704 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G58489 NA non-coding CI01000009 null 14125320 ~ 14156231 (+)
rainbow trout (Oncorhynchus mykiss) G59957 NA non-coding NC_048565.1 CM023219.2 54704630 ~ 54711130 (-)
tiger barb (Puntius tetrazona) G45014 NA non-coding NC_056704.1 CM032073.1 13536944 ~ 13611593 (-)