LOC110524607 (LOC106560317)


Basic Information

Item Value
gene id LOC110524607
gene name LOC106560317
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77548860 ~ 77556868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604430.2
CCTTTCAATTGGACAACAACGCATTAGATCCTTCAGCGGCACTGGACCCGGGTTGTTGTGACAAGTCTGAGGAGCTTTCATTACGCTTGAACTCCGGGATAAGACTGCAACACCGCATCCCAGGAACAGAGGTGCAGATTGCTATTGGATCTGGATGGCCAGTGATTTTGGATATTAGCAGAGACCGAACAAGGAGAGTGAAAATGCCTCGGTCCTTCTTGGTGAAGAGTAAGAAGGCGCACAGCTACCACAAGCCTCGGTCCTTAGAAGATGACTACAGTAGACTTGATACTATCTTAGCTCATATATGTGCAGAGAATAGTAACATTCTAGATGACTCGGATGCCTGGACAGGAGGCGATGCCATCCGCGGGTTCTCCCCAGACTCTCACCTAGTGGACACGGCTGACTTCTCCTCCAAGTCCACACTCAGCTGTGGGGACAGTGTGTGCAGTCCAGCTTCAGTTTATGAAGACTTCTGGCGGCCTCCATCGCCTTCAGCATCACCAGTAGATTCAGAGAAATCCCTGTCTCCCACGGTGGACGAGACACAACCCTTCCCCGTTGTTCCCTTCCGGCCCTATGCGTGGAACAGTTACTCTGGTTCGGACATCCGTCACCTGGTCCAGCAGAGTCTCCAtcaccagcaccaccaccccATGGACTTGAAGAGAAGCCCGGAGGTAGGGTACTACAGCGACCGGGCCATTGAAACAACCCTCTTTAACAGAAGTCCGGTAGCAGAAAATGACAGTGATTACCGGTCCGCTGCCGGTCTGTTCGAGAGAGCCGCCGCCCCCGGGGTAGGGTTGTACTCTGAAGGGAACCTGTACGGGAAAAGCCCAGAAATCAAGGCTGTGTCTGACTTACCCTGCTCACGGTTCATTCTGAATGGTACCTACAAGTGCATCAAATGCAGTAAGGCGTTTTCGACTCCCCATGGGTTGGAGGTCCACGTTCGCAGATCACACAGTGGCACGAGGCCCTACGCTTGTGATATCTGTGGCAAAACCTTCGGACATGCTGTCAGCCTCGAGCAACATAAAGCTGTGCACTCTCAGGAAAGAAGCTTTGATTGCAAAATATGCGGTAAAAGCTTCAAAAGGTCGTCGACTCTCTCCACGCATCTCCTCATCCACTCTGATACACGGCCTTACCCATGCCAGCATTGCGGGAAGAGGTTCCACCAGAAATCAGACATGAAGAAACATACATTCATCCACACAGGTGAGAAGCCGCACAAATGCCAAGTGTGTGGGAAAGCGTTCAGCCAGAGCTCCAACCTCATAACGCACAGCCGGAAACACACGGGCTTCAAACCATTCGGATGTGACCTCTGCAGCAAGGGATTCCAGAGAAAAGTCGACTTAAGAAGACACAAAGAGTCACAACATGGACTAAAACCCTCAAACTAAAATCAAATAAAAGAATGGACACCAAACACTATAAAACAAAACACTTGTTTTGGAAACCAGAAATAAGCTACTGTAGCTATCCATTCCTCAAAGATTTCAGACTGTGATTTACTGGTGGAGAGTTATAGAGGCTTTTGTGCAGTGTAGGTTTAGACAAAACCGGGTTGAACTAGGGAGGGACACTATCTGAACCCAAAATATTTGTACAAAATAACCAGATAGGTAATAACCCCAAATAAAGCGCGTTAACAAAAACAACAGACGACCAATTTCCAACGGACAATTGGGAAAATAGACCTTGTCTAAAGAATGACAGACACTTTGTTTAGTTGGACGCCATGGATGCTGGCATAACAGTCACTACAATAAGGCTATGTGATTTAATAAACAATGGTTGTGTATTTATTTTGAAAACAatgttattttcatttttttcttaGAATTCAAATAGCACATTTGTATTTTATATTAAGAATATCAACTATACGGTATATCCAGGTGTCATTTACTACAATGTCAAACCTTATTTATTAATCAGATTATCGTTTAAATCAAATATAAAAACTGCAATCCAACAGATTTCGAAAGGTTTTTGTTTCGtttctatgtagcctactgcatTATGCTCCAAGCTGCAAAATCCCGCAAGGCCCATCTGAATTATTTGAAGGACAACCAACGCAAATATTcagaatttatttttttattctaacTCAGCTTATCTGGATTCGTTGTAGTAGGCTAGTCTAGACTATTGGTCCAACTAACATTGTTACATTTTATAGACAGAATAAACCCCCTTGAAATGTGTCTTGGAGGGGGACCTGTGATGATGTTAATTTGAGGCAATTCATTTTCGTTGAATTTAATAGTTTAatcctttattattattattattagggatATATTCATTCTGTAACGCCGAAGCGTTACAGATTCAGCGATAGAAATGTCAAGTTAATTTAAATCATGCTGTAAAGCTGAACCTCCGCGATGCGGATGGAATAGTATACTATATTTCCACTGTGTGGATAGTGATTGTCCTCGTGGTTAACCTTCAGTGATTTTTCATAGAAAACATGTCTCTCCTGTATTCATTGAGGGGTATAATATTAACCGAAAAACTTGGCTGAGCACAAATTGATATGAAGTCTCTTAAAACATACACGAAAAAGCACCTACAGCGGCTTGGTGTATTCTCCACTCCATGTAATAGGTCTGTATAAAGTGCTTTCTTGCCGTTGGCTTTTTTACTGGAAATCTGAGAGGTGACCACAAATTAAGTCGAGTATCACAAGGAAAGTCTTCAAGTGCCTTCCAACTGGTAGGTTTATGTTCCCCCATTATTAATTAATCAAACCAGGTTGTGTTTTCTTCTCGTTTTTATCTGAACCACCCAGAAGGGCAGTTTTCTAAAGCCATAGAGTTGATTGCTTAATCATCTATCTATCAAATAATTTCGTTTAGAATGAAGAATTAGATGCTTAAAATATTCGGTTAACTTATATAGAATTTTAAAATGACATCCACGAGTAAATGTAGCTTTTCGTcatggtgaaataaataaaatataattttatgtGGAAAAACACATAGGGAATAGAAACCCAATTCCACCATTACCTAGGCTACAGGATGCTGCTGCGTTTCATCAGACTTAAGCTCCTAGAAACATTTGGTTTGTTTTTACCAAGGCAGTAAGGAGTTATTTGTTTAGACCTCAAACGTTGCCTGAGCATATTACACGTTAACAAAATGGTATGTAACTTTGGCCACTCCGTATAAAGCTCAAGTTGGAAACAGGACCGGACAGGATTGATTTCCGCAGGTGTAACTAAAGACCCATCAAAAAGCGTCACATAGCATGGCTGGAGGGCATCGACTGTACACCACCTCTGCCCGAAACACAGCTTGTAAGCGCAAGAGCAGGAAATGGGGACACAGGTGTATGTGTGGGCTACTATTATCCCTTCCATTGAGAACAATACTCATTAATTTATTCAAACATTTGTAATGAGCAATTTGCTAACATAGAAATAGGGCAGCTATAAAATGAGAGAATGAACAGCAACAAGAAACTAAACAACTATACAAGTTACCCGGTTATATAAAATAGAAAGTTAATCATAATCATGAACTTTAAAAATAAACCTTCAATGTATATTTACATTCCTTTATAGCTAATGTTCCTATAGGCCTGACAAACTGTATATATACTCTacatttcaaaagtttggggtcacttagaaatgtcttttttttttaagtgacattttttgtccattaaaataacatcaaatatatcagaaatacagtgtagacattgttaatgttgtaaattactattgcagctggaaactgcagatctTTAATGGAATATGTACATAGGCATACaggggcccattatcagcaaccatcactactgTTTTCCAATGGCTTGTTGTGCTAGCatttgaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgttctgattaaa
>TU500526
AACAAAACACTTGTTTTGGAAACCAGAAATAAGCTACTGTAGCTATCCATTCCTCAAAGATTTCAGACTGTGATTTACTGGTGGAGAGTTATAGAGGCTTTTGTGCAGTGTAGGTTTAGACAAAACCGGGTTGAACTAGGGAGGGACACTATCTGAACCCAAAATATTTGTACAAAATAACCAGATAGGTAATAACCCCAAATAAAGCGCGTTAACAAAAACAACAGACGACCAATTTCCAACGGACAATTGGGAAAATAGACCTTGTCTAAAGAATGACAGACACTTTGTTTAGTTGGACGCCATGGATGCTGGCATAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604430.2 False 3944 mRNA 0.41 7 77548860 77556868
TU500526 True 323 lncRNA 0.39 1 77551032 77551354

Neighbor

gene id symbol gene type direction distance location
LOC110524605 LOC106560313 coding downstream 20999 77515118 ~ 77527861 (-)
LOC110524600 tgfbr3 coding downstream 145950 77276905 ~ 77402910 (-)
LOC110524597 LOC106560308 coding downstream 332949 77181914 ~ 77215911 (-)
LOC110524596 barhl2 coding downstream 552584 76991991 ~ 76996276 (-)
glrx2 glrx2 coding downstream 959880 76587005 ~ 76588980 (-)
LOC110524608 evi5 coding upstream 1454 77558322 ~ 77617711 (-)
LOC110524609 fam69a coding upstream 70589 77627457 ~ 77642149 (-)
gadd45ab LOC106560326 coding upstream 314897 77871765 ~ 77874843 (-)
znf648 LOC106560330 coding upstream 368347 77914925 ~ 77939001 (-)
glulb LOC106560331 coding upstream 426876 77983744 ~ 77987655 (-)
G442253 NA non-coding downstream 15134 77533518 ~ 77533726 (-)
G442209 NA non-coding downstream 64432 77484191 ~ 77484428 (-)
G442191 NA non-coding downstream 79022 77469618 ~ 77469838 (-)
G442173 NA non-coding downstream 93285 77454912 ~ 77455575 (-)
G442141 NA non-coding downstream 125165 77423352 ~ 77423695 (-)
G442381 rpl5 non-coding upstream 66431 77623299 ~ 77627214 (-)
G442458 NA non-coding upstream 130517 77687385 ~ 77687686 (-)
G442461 NA non-coding upstream 134802 77691670 ~ 77691898 (-)
G442475 NA non-coding upstream 150132 77707000 ~ 77707258 (-)
G442488 NA non-coding upstream 174956 77731824 ~ 77732396 (-)
G442115 NA other downstream 141725 77406742 ~ 77407135 (-)
G441630 NA other downstream 527485 77013999 ~ 77021375 (-)
G441483 NA other downstream 646089 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 958490 76586458 ~ 76590370 (-)
G439788 LOC106560295 other downstream 1973291 75571249 ~ 75575569 (-)
G442807 NA other upstream 524877 78081745 ~ 78082010 (-)
G444001 NA other upstream 1407763 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1666272 79219153 ~ 79237461 (-)
G444691 LOC106605670 other upstream 2174119 79730987 ~ 79731536 (-)

Expression


Co-expression Network