RNA id: TU500660


Basic Information

Item Value
RNA id TU500660
length 913
lncRNA type antisense_over
GC content 0.53
exon number 6
gene id G442381
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77623299 ~ 77627214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTCTTTTTCTAAAGATTTATTAGAACAAAGAATTGTCCCTACATCATTAGGACCAGAGTTTAGCTGTCGGCAGCCTCCTGTTCCTGAGCCCTGAGGAAGCTGGCCTTCTTCTGAGCAACGCGGTCTTTCCTCTGGGCCAGAGAGAGCTTGGCACGGTTCCACCTTCTTCTTCTTGACTTCTTTCTTGGGCTTCTTTTCGTGGACTGGGTTGTTACGAATGCCAGCATGGGCCTTTTTGTACATCTCCTGAACCGTGTCAGGGGCAACGCCATTCTTGATGAAGCGAGAGAACTGCTTCTTGTATGcgtcctcatcctcctccatcaGATAGCTCATGTACTCAGACACATTGACACCCATGATGTGCTTGCGGTGGACCTCTGCATTGAACTCTTTGCTCTCCGCATCATATCCAGGGAAGCGCTTAGTCTGTGGGGGATGGACAGGCCTCCATCCACAGCCCCCTTCAGGGCTCCGAAAACCTTGTTGCCAGTGCTGGTTCTGGCGAGCCCTGCATCCAGGTAGCAGGTGAATGCACCTGGCTGACCGTCGATGCTCTCCACGTTGAACTCATCTCCAGTGACCTCCACCTGTCCCTCGTACACCTTGTCCAGGCCGAACTTGTTCAGCAGCTGCGGGCCAGCAGCAGACCAGTGCAGTAGGCTGCTGCGTAGTTAGTCAGACCAACGGCGATCCCGTACTTGGGCAGCTCGTGGGAGTAGGCAGCGCACACGATCATGTCCCCCTCGATCTTGGCATAGGCAATCTGAAGACGATATCCCGGTTGGAGAAGCGGACAATCATCCTGTATTTGGGTGTGTTGTACTTGTTCTTATCTTGGATGACCAGGCGCTTACGGGCGAAGTAGTCCGTCTTTCCCTCTATGCAGAACAAGGATACCAAAGTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500526 lncRNA downstream 71945 77551032 ~ 77551354 (-) True LOC110524607
TU500509 lncRNA downstream 89573 77533518 ~ 77533726 (-) True G442253
TU500463 lncRNA downstream 138871 77484191 ~ 77484428 (-) True G442209
TU500445 lncRNA downstream 153461 77469618 ~ 77469838 (-) True G442191
TU500426 lncRNA downstream 167724 77454912 ~ 77455575 (-) True G442173
TU500739 lncRNA upstream 60171 77687385 ~ 77687686 (-) True G442458
TU500742 lncRNA upstream 64456 77691670 ~ 77691898 (-) True G442461
TU500758 lncRNA upstream 79786 77707000 ~ 77707258 (-) True G442475
TU500771 lncRNA upstream 104610 77731824 ~ 77732396 (-) True G442488
TU500946 lncRNA upstream 131608 77758822 ~ 77770434 (-) False G442620
XM_021604432.2 mRNA downstream 5588 77558322 ~ 77617711 (-) True LOC110524608
XM_021604431.2 mRNA downstream 5591 77558322 ~ 77617708 (-) False LOC110524608
XM_036978449.1 mRNA downstream 5591 77558322 ~ 77617708 (-) False LOC110524608
XM_036978447.1 mRNA downstream 23196 77558322 ~ 77600103 (-) False LOC110524608
XM_036978448.1 mRNA downstream 28416 77558322 ~ 77594883 (-) False LOC110524608
XM_021604434.2 mRNA upstream 243 77627457 ~ 77639794 (-) False LOC110524609
XM_036978450.1 mRNA upstream 243 77627457 ~ 77642149 (-) True LOC110524609
XM_021604443.2 mRNA upstream 244551 77871765 ~ 77874843 (-) True gadd45ab
XM_021604446.2 mRNA upstream 298001 77925215 ~ 77939001 (-) False znf648
XM_021604447.2 mRNA upstream 356530 77983744 ~ 77987655 (-) True glulb
TU500354 other downstream 216164 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 601924 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 720528 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 1032929 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 2047730 75571249 ~ 75575569 (-) True G439788
TU501172 other upstream 454531 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1337417 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1595926 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1596789 79224003 ~ 79225868 (-) True LOC110524635
TU503246 other upstream 2103773 79730987 ~ 79731536 (-) True G444691

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU66619 True 320 lncRNA 0.44 2 CI01000009 14125320 ~ 14156231 (+)
rainbow trout (Oncorhynchus mykiss) TU66619 True 274 lncRNA 0.46 2 NC_048565.1 54704630 ~ 54711130 (-)
tiger barb (Puntius tetrazona) TU66619 True 2439 lncRNA 0.42 4 NC_056704.1 13536944 ~ 13611593 (-)