RNA id: XM_021604432.2


Basic Information

Item Value
RNA id XM_021604432.2
length 5922
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110524608
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77558322 ~ 77617711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGACGCATGCTCTGTACGGTGGATGTAAACATTGGAGCTGCCCTTTTGTTGGCACGAGCTGGCTGTCGATTTGTGTACACGTATTCGGCTCGATGGGTTGTTTGGACGTGGAGCTGTTGCCTGGTGGAatcagctagctaactagcagacTCGGCCTAAAAATAAATCCGAAACCAGGCCATTGAACTTGTTTAAATTCAATTGCGCAAGTCTGTGCTGTTGTACTTTGGTCAATGGAAAGTTAATGTTTATCCCCCAGGGTTGAAAACGCGACTAGGCACGGTGGCGACTGATAAGGTTGCAGGCAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACTCCATGTCACACACGGTTAGTCAGATGGCTAGCCAGGTCGCCACCTCGTCTGTCCAGGTGGCAACGGTGCCCTCGTCCCTGCAGACCACCACAGCCGCCTCCTCAACatccctctccccgtctcccacGTCGGCATCTCCCGCTAAGCTCAGCCCAGATGAACTGGAACTGCTCGCCAAGCTGGAGGAGCAGAACAGGTTGCTGGAGACGGACAGTAAGTCCCTCCGCTCTGTGAACGGCTCCAGGAGGAACAGCGTCTCCAGCCTGGTGTCCAGCTCCTCGGCCTCCTCCAATCTGTCTCACCTGGAGGAGGACTCCTGGATCCTCTGGGGACGCATCGTTAACGAGTGGGAGGACTTCCGCAAGAAGAACGAGAAGCAGCTCAAGGATCTGGTCAGAAAAGGGATCCCCCATCACTTCCGAGCAATAGTATGGCAGTTGCTATGCAACGCCCAGAACATGCCTATCAAAGACCAGTACTCTGAGCTGCTGAAAATGACATCACCATGTGAGAAGCTGATTCGCCGGGACATCGCCCGGACGTATCCTGAGCATGACTTCTTTAAGGAGGACAGCTTGGGACAGGAAGTACTCTTCAATGTTATGAAGGCCTACTCTCTGGTGGACCGGGAGGTCGGCTACTGTCAAGGAAGTGCTTTTATCGTCGGACTGCTTCTCATGCAGATGCCAGAAGAGGAGgcgttctgtgtgtttgtgaagcTGATGCAAGACTACAGACTGAGAGAACTGTTCAAGCCCAGTATGGCTGAACTGGGTCTCTGCATGTATCAGTTTGAGTATATGATCCAGgAACTTCTCCCAGACCTCCATATCCACTTCCAGGCCCAGAGTTTCCACACCTCTATGTATGCCTCTTCCTGGTTCCTCACCATCTTCCTCACCTCATTCCCTCTCCCTGTTGCCACCAGGATCTTTGATATCTTCATGTTAGAGGGTCTGGAGATAGTGTTCCGCGTGGGGCTGGCCATCCTACAGATGAATCAGGCAGAACTCATACAGCTTGATATGGAGGGAATGTTACAGTACTTTCAGAGGGTCATTCCCCACCAGCTGGAAAGTGGACCAGACAAGGTCATCCTGGCTGCTTATAATGTCAAGTACAACGCCAAGAAGATGAAGAAGTTGGAAAAGGAATACACTACAATCAAAACTAAGGAGATGGAGGAGCAGGTGGAGATTAAGAGGTTGCGCACAGAGAACCGACTGCTGAAACAGAGGATAGACACACTGGAGAAAGAAAGTGCTTCATTGGCAGATAGATTGATCCAGGGACAAGTGACACGTGCCCAGGAGGCAGAGGAGACCTACCTGGTCATGCGGGAGCTGGCCACGGTCAGGCAGCAGAGCGAAGAGGCCACAGCTCAGCTGGAGCTAGCACAGAGCACCATCAGGGATCTCCAGCAGAGACCCCTATTGAAGGGCATCCCGCGCTACACAGAGGAGTCCATCCTGCAGCTGGAGAGAGAGCTGGTTCAGGCCAGGCTAAAGGAGGCTGAGTCCCAGTGTGCCCTCAAGGAGATGCAAGACAAGGTCCTGGACATAgagaagAGGAACACATCTCTGCCAGATGACACCAACGTGGTGCGGTTGCAGGAGGAGCTGATAGCAGTgaagctgagagaggctgaggctGTGATGGGGCTGAAGGAGCTCAGACAacaggtcagagacctggaggagCACTGGCAGCGTCACCTGGCGCGTACGGCGGGCCGCTGGAAGGACAACCCTAGGAAGAATGCTGTGTCTGAGCTGCAGGATGAGCTGATGAGTGTCAGGCTACGGGAGGCTGAGGCCCAGGCAGAGCTCAGAGAGACACGTCAGAGGATGATGGAGCTGGAGACAcagAACCAGATCCATAGCAACCAACTGCGTCGGGCAGAGCAGGAGGGGCGGGGCTTTCAGGAGCGTGTGACTGTGCTGACGGCCCAGAATAAGGGCCTACACGTTCAGCTGCAGGAGATCAAACGCAAACAGGCAGAGATTGAGTGCAAGAACAAggaggaggtgatggcggtgaggctgagagaggctgacaACATCGCTGCCATGGCCGAGCTGCAGCAACAGATCTCTGAACTGGAGATACAGAAAGAAGAAGGGAAGGTCCAGGGCCAGCTGAACAACACAGACTCCAGTCAGTACATCAGAGACCTGAAGGACCAGATAGCTGAACTCAAACATGAGGCTGACCCAGATCCGCTGCCTAAAAGGCCAGAGGGGGAGCAGCATGTCCAATCAGCCCGCTTTTGATGGGATCCACATTGTCAATCACTACATACCAGATGATGAGTCGTACCACTCCTCGGACGAAGACACAGGTGTAGGCAAGACCCCCTCCCACCTGGACCATCAGCACAGCAGCATCAGCCGCATCAGGCTGAACCCCTCCCTGGGTCTTGGGGACACTGACAGTGAGGGGGATGATGATGGGCATGGTCTGGTTCTCTCTGTGCCTCCCATTGGCATCCACAAACACACCACCGTGTGACTGGGTGATGGACACCATCGCTAGACGCCTGGAGGCTGATCAGGGCAGTTCTGATCTGGTACAGTGGGACAGAGGGGTTGTCCATGGTAGCAAGCCACTCTTCAGGAGAATGGCGTCTGACTGGGACTCCAATGTAGGGAGCTCCTTTCAATGGAATCTTTGGAAGCATGGGATAGAATGTGTGGGCTTTGTCAACAAGTGAAGTCGTAGCAGAATCACACCTGTGGTGGAGTTGGTTTTTTTCTTTGTCCGTTGCGTCAGTCTGCTTTACTCTTGTTTCGCCAAAACCCACCTGAAGAGGATCATATCCATGTGTTGCTCTGGTCTGGACCCCAGGCAGGCAGATCAGAGAAGGACAACATGGAGGTTCAAGTAGCCGCCTGTGCTCCACGAAGCTAGGCTGACCACCAGGGGAGTGGACTGGGGTTACCCTGTCCAGGGTGACCCCACCCAGACAACCAAACTACAGGAACTCCTTCAACCCCACAACCAACCATGGTacaacagacacaacacacagagactgtGCAATAAAATGTTTTATGCTTTATGATGACTGACACTTCTTTCAatcagtttatttttttatcgCTTTTATAAGTGGACAATCAAAAATGTATAGAGCCCTTTTGTGTGGGTGTCTTTATATCAGGAGAGAATAATGTACTGAAGAGTGATGAATGTCTCTATTGAACATGGTTAATGAGCCCCAGTATCAAACAGAAAGTGTCAACAAGCATTAGGGTCGTATTCACTAGACAgcaaacaaagaaaaaaaaagaaggacCAAAAAAGGGAGGGACTAGTGTTAACAGCTGATATGTCCCCCATCAGGGGACTATATACTAAATAGATTTTTAGACCAAGGAGTTGGAAATGGAGCTTGCAGTTCCTCCAGGAACGGTGTACCACTTCtctaaaaaaatttaaaaaaaaaaaaaaaaaaatgtttttgtttcaaAACTTGCCGTTTGCAACAATGTGCACGACCTAGGTTGACATAATGTTGGCTCGTTGGCCTTGAGACATACAACCTGTTTATCATCAGGCCTGGTATAGGCCTATCCAAAGGTCAATTTGAATCCTGTATACTCCGTATATATGTAATTGTTTGTTTTTCATGTCCATTTTGACTTGAAAATATGTATCTAATGAATTATTGCATATCTGTTTAATGTAGGATGCGGCTGAAAGGGACATATCACTCTAGTTGTCAAGATGCACAGAACTGATTAGCAGACATTTCTTTCAGATGTGGGCTGTGTTCcaattctccacccttctccagAAGTGAGCACTTGTTCACGTGCCCTCATGCATTTAAAGGCATTGGATTGGTGCAAGCAAGCATGAagggagtttccaccatattccctacaccAGTGCATTTCTTTTATATCTATGAGGGGGAGCGTACAAATGCACTCTTCGGAAAAGGGGTAGAGTATGGGAACGTATCCACAGTCTCAATGTTCTGTAGATGTTTTCATATATCCTACTTTTCTCTGTTGGGACAATCTTACTTTTGGAGGAAGGACGGATTTGTATAGGAAGGACGGACTATGTATAGCTATGTATAGCTTGCCATTTGGCATGCATCATAAGAAATGTGCTGTTTGTTTCCTCTGTGAATGAAGCAAAGTGTATTGTCAAGTGTTACCAAACTGTAGGAGGGGTTGTATAAGCTGGtctcagatcagtttgtgctgtatAGCCTATAACTCGTATGGTCATTGTGATGCCTTGGCATGACAGATCTGGGACAATGATGGCATTTTAAACAGTAGGCTCTGCCTGCCAGATAAATATGCACCACTTGGTTTCATAAAGGTTGATGTTGATCCATTATCAGGGTTAGCAGAACCCTAAAACAGACAACTTCTCTAGGTTGACAGGACCTGCGCCTTTTACCCCAGAGCCTTCGTAGCATTAAGATAATCCTTACAACCTTATTACTATGTATATTTAATAGCCACGGTGTTTCCCTGAGCCTGCGTTAGTAACGTGGCTCTTAAAAACCTTTGCACATCTACGAGTGATCCAGACTACTCGTAGAGCAGTCAAAGTGCATCGTTAGATGTATTTTTGCCCTTCCGCGTCACTTTATTCACAGATCTCCGCTAAAAATCTCCTAAACATCATGATTCTATTGGTCTGATTGTAACTGCCGATAACTTCAGAAGGACGttagttgactacaaatacaaagttgccaaaGTATTTCTAATTGTTGCAAACAAATTAAAACCGATATTATTACACATATTATTACATGGACAACAGAGCCTATAATTAGGCTATTTTAATCTTATTGAAATCAATTTCATGTTCAATCAGTTGAGTTCTAGTTTGCGACTAGGCTACAATTTGAAATGTTTGCCTCTGTGACAACGTGTGTAATGATATGCCCAATCTGTGATTTCGTGCATTATTATAAGCATAATAAACCGTGTCGCCTTCAATCGCCATAGGTGGTGATCTCTCATCAGTATTGTGGCATAATTATGTTAAaataagatttgaatggagaaagctgatccgagCGCTGTTTTTCTTTCTATCCTATCAGTCTCGACACATGGTCTCTTTACGTGCTTGTTTGGGGAACACTTAAAGTTGGCTTGTAAATAACGATGCATTCGGTACAATCATCGTAATGCTTAAATTACATCGCAACTTGGAAATGAGGCCCACAACAATGGACATCTCATAATTGCTAGATTTTTAAACGTTTTTAAAGCAGTGGCCCTTTAAGACATTAGAACCAAAAACCTATCAGCCAAGTCTCGGCAAAATATTTATATCCAGAACGCACGGACTCATTGTTCAGAAGAGGTTTTGTGATACTGATGTGCTTGCTATTCCTTAGTTGGTTGAGGACAACGATGGATGGAATATTTGGAAAGGCATCATGACGCAGTTTTGGCACTTTCAGAGAAAGACAATATAATGCAGTAAAGAGAAGTCTACATGGAGTAATAACACTATGGAATAATCATTACCACACTCTGAAAACATGTATGTGAAATGAATGTGTTTGAGTTCACAAATAAACTATTTGATAAACA

Function

GO: NA

KEGG:

id description
K20242 EVI5; ecotropic viral integration site 5 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500526 lncRNA downstream 6968 77551032 ~ 77551354 (-) True LOC110524607
TU500509 lncRNA downstream 24596 77533518 ~ 77533726 (-) True G442253
TU500463 lncRNA downstream 73894 77484191 ~ 77484428 (-) True G442209
TU500445 lncRNA downstream 88484 77469618 ~ 77469838 (-) True G442191
TU500426 lncRNA downstream 102747 77454912 ~ 77455575 (-) True G442173
TU500660 lncRNA upstream 5588 77623299 ~ 77627214 (-) True G442381
TU500739 lncRNA upstream 69674 77687385 ~ 77687686 (-) True G442458
TU500742 lncRNA upstream 73959 77691670 ~ 77691898 (-) True G442461
TU500758 lncRNA upstream 89289 77707000 ~ 77707258 (-) True G442475
TU500771 lncRNA upstream 114113 77731824 ~ 77732396 (-) True G442488
XM_021604430.2 mRNA downstream 1454 77548860 ~ 77556868 (-) False LOC110524607
XM_021604427.2 mRNA downstream 30461 77515118 ~ 77527861 (-) True LOC110524605
XM_021604412.2 mRNA downstream 155412 77276905 ~ 77402910 (-) False LOC110524600
XM_021604413.2 mRNA downstream 155412 77276905 ~ 77402910 (-) True LOC110524600
XR_002473616.2 mRNA downstream 342411 77183049 ~ 77215911 (-) True LOC110524597
XM_021604434.2 mRNA upstream 9746 77627457 ~ 77639794 (-) False LOC110524609
XM_036978450.1 mRNA upstream 9746 77627457 ~ 77642149 (-) True LOC110524609
XM_021604443.2 mRNA upstream 254054 77871765 ~ 77874843 (-) True gadd45ab
XM_021604446.2 mRNA upstream 307504 77925215 ~ 77939001 (-) False znf648
XM_021604447.2 mRNA upstream 366033 77983744 ~ 77987655 (-) True glulb
TU500354 other downstream 151187 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 536947 77013999 ~ 77021375 (-) True G441630
TU499702 other downstream 655551 76902382 ~ 76902771 (-) True G441483
TU499371 other downstream 967952 76586458 ~ 76590370 (-) True G441168
TU497923 other downstream 1982753 75571249 ~ 75575569 (-) True G439788
TU500657 other upstream 5588 77623299 ~ 77627214 (-) False G442381
TU501172 other upstream 464034 78081745 ~ 78082010 (-) True G442807
TU502514 other upstream 1346920 78964631 ~ 78966029 (-) True G444001
TU502678 other upstream 1605429 79223140 ~ 79237461 (-) False LOC110524635
TU502679 other upstream 1606292 79224003 ~ 79225868 (-) True LOC110524635

Expression Profile