RNA id: XM_021604478.2


Basic Information

Item Value
RNA id XM_021604478.2
length 3671
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110524635
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79219153 ~ 79237461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGCGCATGCGCTCTGCCTGAGGACTGCTACACAGACTGCAATATGGCGAGAATGCCTGGCAGCGCAGACTGCTCTAGCGACACGGCGGGGACAGAGCGGGTGGAGCACATGAGCTGCCCAGAGACTGAGAGGAGCGGAGACGAGGCGGAAGAGGATGAGATCCAGGAGGTGCAGATCACCGGCGAGGAGGAGGGGGAGTACGAGGAGGATGTCGAGCTGGAGTGGGAGGCAGAATGTGTGGACCCCGGCAGCTGCTCGGTTATGGAGACAGAAGCGGTCCGTATGGGCAGTACGGACCAGTGCAGCGGGATGGGAGCGGGGGCGGACCCCAGACTTTTCCACATCCCCGGACTGGACTCGGATCCGGAGGGAGACCTGCAGCGGTCTGACCGCTCCAGACTGAGCGAGAACACTCGCCTGGCTACTAGGTACGCAGTCAGGATCTTCCGGGAGTACCTGAGTGAGAAAGCCCAAAGTCCTGACTTTGAAACTCTGGACAAGGAAGCGCTGTGCGCGGTCCTGCGCTCCTTCTACGCGGAGGCGCGATCGAAGAGTGGCCAGCTCTACAGCAAGTCCTCTCTCATCAGCATCCGGAGTTCTCTGAACCGCTACCTGAATGAGCCGCCTTACTGTCGCACCCTGGACCTCACCAAGGACCCAGAACTGCGCAGCGCCAACCTGACCCTGGCCGCAGTCATCAGAAAGCTGGAGGAGCAAGGTGCCGGTCCCGTTGTGCAAAAACAGGCTATTACGCGGGCGGACCTGAGAAAACTCTACACCTCTAGTGTGTTTAACACCGATACGCCGTTCGGGCTTCTCAACAAAGTGTGGTTCGAGACATGTATGTATTTCTgcacgagggggagagagaatcaGCGCGAGCTGGAGGAGGATTCATTCGGGCTAGCCATAGACGAGGATGGGAGAAAGTTTATCTATTTCAAAGCGCTGGGGCCGTATCACAAGTCTCGCTCGGCGTCCTGGACTAAAAAAAGACCAGACACGGATGATGATACTCTGCCGCGCATGTATGAGACGGCCACGGAGTTTTGTCCGTATGCCAGCTTTGTGAAGTATGTCTCGAAACGGAACCCGCTGTGCAAAGCGTTCTTCCAGCGCCCGCGAGACCACTGCTGCTTAAGCGACATGACATGGTACGAGAACAAAGCAATCGGTAAAAACCTGCTGGGCACGAGGATGCAGATGCTGTCGCGTGCTGCCAAGCTTTCAAAGACCTACACCAACCACTGCATCGGCGCAGTCTCCATAGCAACGCTCAACAGCATCGCTGGTATCGGGTCAAAGTCAGTATCGCTTCACGTTGCCTCGGAAACGGTCAATGGTGGCGCACAGTCTTATCTCCAGCTCGTGATCCCTTATAGCCGACAGGTCACGGACGCAGTGGAACTGAAGCCGCAGAGAACGACAAGGAAATGTCGTTCTCACTGCCCCGGCGACGTCTCTGGACCTCCATCACCTAAGAAGCTCTGTGTGCGTTCCGAGGAACGCGGAGAGTCCCCGGTGGTCATAGTGGACGGTACCGAGCCCGTGGACACCCGAGCCCCGGAGCCCCACGGCCAGCCGCCCGCTCCTTTACCAGCTGGCGTGGTAGCAGCGCAGgATAGCCGTAATAGCAGCATGGCCAGCCGGccactggtctcccagtcccctGCCTCTCCGCTGGGCTCAGGGGGTATAGGGGGCATCCCCACCCCCGCCCAGCTCACCAAAACCAACGCCCCTGTACACATAGACGTAGGAGGTCACATGTACACCAGCAGCCTGGCGACACTGACCAAGTACCCAGAGTCACGGATTGGTCGTCTGTTCAACGGGACAGAGCCCATAGTGTTGGACAGTCTGAAGCAGCACTACTTCATAGACCGAGACGGTCACATGTTCCGCTACATCCTCAACTTCCTGCGGACGGCAAAACTGCTCGTCCCTGACGACTTCAAAgagTACTCTCTACTCTATGAGGAGGCCAGGTTCTTCCAGCTATCTCCACTACAAGCAGAATTAGAACGCTGGAGGAGTGAGCGCGAGGCCAGGAAGgtgtggcgtgtgtgtgagtgtgtggtggtgCGTGTAGCTCCAGAGCTGGGGGAGAGGATCACTCTAAGTGGGGACAGGGCTCTGATCGAGGAGGTGTTTCCAGAGGTCGGGGACGTCATGTGTAACTCCCTGAACGCAGGCTGGAATCATGACTCTACTCACGTCATACGCTTCCCACTCAACGGATACTGTCACCTCAACTCTGTACAGGTGTTGGAGAGGTTGCAACAGAGAGGATTCGAGATAGCAGGGGCGTGTGGCGGGGGAGTAGACTCCTCCCAGTTCAGCGAGTACGTCCTACGCAGGGAGGGAAGTAGCAACGGACAGCGTGGCCACACCCTCATCCGCATCAAACAGGAAGCACTGGACTAAGCCCGACCCAGGTCAgatcagaggtcaggggtcagtggATAATTGGTCAGGAGAATCCAGAAAGCGACGCCTCCATCTCCAAGGGAACGCCAATAGTTGTTTTAGAATTTTGTGGACATAGGTATTGCCATGATGAAACGGTGATTGTACCTACACCAAAGGAGAGCAATAGAACTATGACCTCACCGCAATGAACTATGGAAGTCACTAACCAGGCGGTACGCAGATAGTGACTGACCCCTCTCCCCATGAGCAGGGACCTATAGCATAGAGAGAAGCAACATTAGCACTATCATCATACTACTCATGTTACCGTGTAGGATTATTCTGTTTTATAGTGTCATAATAATACTATGTGGATTCATTAAGATTCTTACAATAATGTAAATAATCACATAATGGGATGAGGTCATGACTGAAACTCTGAAATGGAGAAACGACACTAATGAACATGGACGATTTGCAGCTGAATGTTAAAAAGCACAAGTGTCTGGGAAATCTAACCCAGCCTAAACTAAATAGATGAAATATATGGTTCTGTGAAGCTAAAGTTATTACGAGGAACTCGTGgaagttttttttgttgttgaaattttTATAAACCAAAAATATGGTTTTCACATGTTAAGTCTTAATATTATGACAATGGAATTCTGAAGAGGTTCTTCTACACTTTATATTCAGCACAATGATAAAAGAGATTTGTCTTGTCAGAGATTGAATTGTTGCATGTTTTATGCTGAGCATTTGAGCAGCAGAGGACTTGAGATCTGTATCAAAACTGTCTGTCACACTAAAGGAAATTTGATTTCATAAACGAATGTACCAAAAGGATGTAAAAACATGTTTCATACAAAAAAaagtctgcatgtgtgtgtgtctattagtTATTCAGGAAACTGTAAATGAGAATATTCACTAAAATGTTCATTTTAGTTAGGCTAGCAATCACAGATCAGATGACAAACCTACCATCACCGTATAATTGAAACCGGAAAGTTAAGGGAGAGGTTTGCATTAATTTTAGGTGGCATGGTAAATATTCCACCTGCTTCAGAGTTTAGCAGAAAGTAGTTAATGAATATCTATAAGCAATGCATGAATATTAAGTACACTAAAGTGCCTTTGTCTTCCTGGATTTGACAAGCTGTCAGAGGGAGGGGCTTGTCTTTGATCTGAGACAGGAACAGGAAGCAGTGGGACATATGATGAGCTTGTTAACGTTGCCGACGATGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502676 lncRNA downstream 1654 79217282 ~ 79217499 (-) True G444149
TU502672 lncRNA downstream 5464 79213320 ~ 79213689 (-) True G444145
TU502671 lncRNA downstream 6095 79212845 ~ 79213058 (-) True G444144
TU502670 lncRNA downstream 7346 79211600 ~ 79211807 (-) True G444143
TU502669 lncRNA downstream 8582 79210362 ~ 79210571 (-) True G444142
TU502695 lncRNA upstream 26518 79253157 ~ 79253613 (-) True G444167
TU502698 lncRNA upstream 32666 79259305 ~ 79260230 (-) True G444170
TU502767 lncRNA upstream 126211 79352850 ~ 79353065 (-) True G444235
TU502770 lncRNA upstream 127529 79354168 ~ 79354403 (-) True G444238
TU502856 lncRNA upstream 154603 79381242 ~ 79381457 (-) True G444318
XM_021604464.2 mRNA downstream 832086 78383005 ~ 78387067 (-) True hyi
XM_021604453.2 mRNA downstream 973323 78239768 ~ 78245830 (-) True LOC110524621
XM_021604447.2 mRNA downstream 1231498 77983744 ~ 77987655 (-) True glulb
XM_021604446.2 mRNA downstream 1280152 77925215 ~ 77939001 (-) False znf648
XM_021604443.2 mRNA downstream 1344310 77871765 ~ 77874843 (-) True gadd45ab
LOC118964722 mRNA upstream 16608 79243247 ~ 79282591 (-) True LOC118964722
XR_005051973.1 mRNA upstream 67620 79294259 ~ 79294385 (-) True LOC118964780
XM_036978488.1 mRNA upstream 158901 79385540 ~ 79459507 (-) False cdh2
XM_036978489.1 mRNA upstream 160250 79386889 ~ 79450198 (-) False cdh2
XR_005051592.1 mRNA upstream 309945 79536584 ~ 79606825 (-) True LOC118964535
TU502514 other downstream 253124 78964631 ~ 78966029 (-) True G444001
TU501172 other downstream 1137143 78081745 ~ 78082010 (-) True G442807
TU500657 other downstream 1591939 77623299 ~ 77627214 (-) False G442381
TU500354 other downstream 1812018 77406742 ~ 77407135 (-) True G442115
TU499853 other downstream 2197778 77013999 ~ 77021375 (-) True G441630
TU503246 other upstream 504348 79730987 ~ 79731536 (-) True G444691
TU503706 other upstream 755822 79982461 ~ 79987704 (-) False G445115
TU503794 other upstream 950123 80176762 ~ 80177080 (-) True G445197
TU503806 other upstream 998836 80225475 ~ 80226201 (-) True LOC118964653
TU503818 other upstream 1019304 80245943 ~ 80261505 (-) True G445220

Expression Profile