G377517


Basic Information

Item Value
gene id G377517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21568954 ~ 21569214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU429108
tctgacttagaatacgtggacaattacaaatacctgggtgtctggttagactgtaaactctccttccagactcacattaagcatctctaatccaaaattaaatctagaattgtcttcctatatcgcaacaaagcatctttcactcatgctgccaaacataccctcgtaaaactgaccatcctaccaatcctcgactttggtgatgtcatctataaaatagcctccaacactctactcaacaaactggatggagtctattac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429108 True 261 lncRNA 0.39 1 21568954 21569214

Neighbor

gene id symbol gene type direction distance location
LOC110523408 LOC106565015 coding upstream 34793 21527555 ~ 21534161 (+)
LOC110523409 LOC106565015 coding upstream 47126 21518557 ~ 21521828 (+)
LOC110523407 LOC106568363 coding upstream 75519 21478685 ~ 21493435 (+)
LOC110523406 crybb1 coding upstream 91783 21473853 ~ 21477171 (+)
npm2b LOC106592477 coding upstream 280423 21277568 ~ 21288531 (+)
LOC110523411 LOC106568349 coding downstream 9776 21578990 ~ 21597442 (+)
LOC110523412 LOC106568387 coding downstream 32819 21602033 ~ 21609081 (+)
LOC110523413 LOC106568345 coding downstream 46986 21616200 ~ 21622938 (+)
LOC110523414 cetn3 coding downstream 64318 21633532 ~ 21635979 (+)
LOC110523415 LOC106568324 coding downstream 100207 21669421 ~ 21684268 (+)
G377513 NA non-coding upstream 3348 21565274 ~ 21565606 (+)
G377505 NA non-coding upstream 18393 21550337 ~ 21550561 (+)
G377494 NA non-coding upstream 50708 21517745 ~ 21518246 (+)
G377455 NA non-coding upstream 113518 21450467 ~ 21455436 (+)
G377416 NA non-coding upstream 171840 21396701 ~ 21397114 (+)
G377520 NA non-coding downstream 1995 21571209 ~ 21572272 (+)
G377523 NA non-coding downstream 7990 21577204 ~ 21577584 (+)
G377527 NA non-coding downstream 20281 21589495 ~ 21591705 (+)
G377533 NA non-coding downstream 42905 21612119 ~ 21612381 (+)
G377535 NA non-coding downstream 45864 21615078 ~ 21615793 (+)
LOC110523400 LOC106568542 other upstream 410035 21108129 ~ 21160149 (+)
LOC110522817 LOC106568462 other upstream 732395 20831111 ~ 20842676 (+)
LOC110522816 LOC106568602 other upstream 810453 20508074 ~ 20759255 (+)
G377022 NA other upstream 972091 20591480 ~ 20596863 (+)
G376320 NA other upstream 1585106 19983261 ~ 19983848 (+)
G378660 NA other downstream 603321 22172535 ~ 22231920 (+)
G378832 NA other downstream 934538 22503752 ~ 22506270 (+)
G378868 NA other downstream 1032896 22602110 ~ 22629669 (+)
lhfpl2a lhfpl2 other downstream 1373078 22942205 ~ 23007315 (+)
LOC110522832 LOC106567816 other downstream 2054750 23623921 ~ 23678038 (+)

Expression


Co-expression Network