G379279 (aggf1)


Basic Information

Item Value
gene id G379279
gene name aggf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23356006 ~ 23356429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU431133
TATCATCCTGACGGGCGGTTCTCTCTGGAACTTTCTTCCACTTCCTTCCTTTCTTGTCTAggctctttttcacctggctggTCTCTGAGACAGGCTGTACAGTAGGAACCTCTATCCTGGAGTGGAACTGGTACTTGCCACTCTCTGCATCGTAGTAGTAGTACATGCCTGTGTTGTTATCATAGTACAACTGACTGGCCGAGTCGTAGTAAAAGCCAGTGCTGTGGTCGTAGTACATCCCTGTGGTCTCATCAAACACAAAGCCAGTCTGTGTCATGGCCTGCTCAGCTGTGGCTCTCAGCATGTCTGCTATGGAGCCCGTATCCACTTCCTGCTGGAACAAA

Function

symbol description
aggf1 Predicted to enable nucleic acid binding activity. Acts upstream of or within blood vessel development; hemangioblast cell differentiation; and positive regulation of protein kinase B signaling. Is expressed in several structures, including blastomere; brain; cardiovascular system; head; and liver. Orthologous to human AGGF1 (angiogenic factor with G-patch and FHA domains 1).

NR:

description
angiogenic factor with G patch and FHA domains 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU431133 True 344 lncRNA 0.50 2 23356006 23356429

Neighbor

gene id symbol gene type direction distance location
wdr41 wdr41 coding upstream 104418 23237803 ~ 23251588 (+)
LOC110523452 otp coding upstream 141191 23208733 ~ 23214815 (+)
tbca tbca coding upstream 152440 23193874 ~ 23203566 (+)
LOC110523451 ap3b1 coding upstream 197986 23065654 ~ 23158020 (+)
lhfpl2a lhfpl2 coding upstream 348691 22942205 ~ 23007315 (+)
LOC110523456 crhbp coding downstream 14537 23370966 ~ 23391981 (+)
LOC110522829 LOC106567920 coding downstream 65214 23421643 ~ 23422884 (+)
LOC110522830 f2rl2 coding downstream 114559 23470988 ~ 23474212 (+)
LOC110522832 LOC106567816 coding downstream 267492 23623921 ~ 23678038 (+)
vatg1 LOC106567829 coding downstream 353414 23709843 ~ 23711877 (+)
G379273 NA non-coding upstream 4643 23351105 ~ 23351363 (+)
G379263 NA non-coding upstream 25412 23330368 ~ 23330594 (+)
G379202 NA non-coding upstream 151907 23203871 ~ 23204099 (+)
G379162 NA non-coding upstream 239977 23115685 ~ 23116029 (+)
G379142 NA non-coding upstream 297259 23058519 ~ 23058747 (+)
G379282 NA non-coding downstream 3795 23360224 ~ 23360688 (+)
G379333 NA non-coding downstream 99936 23456365 ~ 23512877 (+)
G379350 NA non-coding downstream 120051 23476480 ~ 23515214 (+)
G379356 NA non-coding downstream 133650 23490079 ~ 23492379 (+)
G379392 NA non-coding downstream 203593 23560022 ~ 23567553 (+)
G378868 NA other upstream 726337 22602110 ~ 22629669 (+)
G378832 NA other upstream 849736 22503752 ~ 22506270 (+)
G378660 NA other upstream 1124086 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2197087 21108129 ~ 21160149 (+)
G380340 NA other downstream 384005 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 482095 23838502 ~ 23844345 (+)
G381239 NA other downstream 1331310 24687739 ~ 24776429 (+)
G382186 NA other downstream 1869013 25225442 ~ 25225730 (+)

Expression


Co-expression Network