XLOC_002324 (akap1a)


Basic Information

Item Value
gene id XLOC_002324
gene name akap1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37400838 ~ 37415223 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004426
CTTTTGGCACCGTTTTACATGTTTCTGTTGTAGCTGtagtgtgatttattttttattaatgttttatactCTGTTGTCCATTAAGCATTTTCTTTGAAATGCTTCGTTTATCGTCACATTTTCAAGCATATTAATACAATTTGGAATTCAATCGCCTGATTGCTGACACCTGCTCACGTGACATCACAATCAAACCCTCGCTGCTGAGCTTCACGtgGATCTGTGGAGGGAGGATGCCGGTGTTGGTGAGGCCGCTGGTTTCTGTCACTGTGTTGACTCTGCTGGGCTGGTGCTGGTACAGTTTTAGAAGGAGGAGAAAAATTAAAGCTTCTCTCTGGACTGAAGAAGAGAAGTGTTTGTTAGACGGAAGCAGCCCGGTTCAGTTTTCACCTACTGACAACGGTGTTTTGGGGCAAAGtgacCTGAAGATGAATCAAAACATCTCCAGATCCCCTGAAATTACAGAGTTAACTGACACATCACCATTTGTGGAAATGCACAAGTTTACCAGTACCTCACCTGTAATAGGCCTCAATGAGAGGGTTCGGCCTGAGCCAGAGGGAGAAGTATCAATTCGTTTCCCTGAAACAAAccaaagcaaaaaagaaaaggacGATTTTACTGGTGAAGTTCATGAAGATGACTTTACTGATGATAAAGATGGCAGCAGCCTGTCTGATTTCTCCCCTGAACAAAGCCAGGAGAACATGGAGATCATCAGTTCTGTTCTGGTCCAGCAAGTAATACACACAACAGAAAACCAGCACTCCAGCGATCCACTTTCGAGACCTCCAAACAGTGGATTTCAATCTGCTTCTCAAGATCTAGTTCAGCATCAAAGCATCAGTGGCGATGACAACGACAGAGAAACCGGCTCATTCAGGAAAAAACTGCTCAGTGATTTAGGAGCTTCTGTTGGAGATGATTCTGGATGTAATTCCAGCTTCTCAGAGGATGTTTCCGGTTCGGAGGGACTGACCTGTGAGATCTCAGAGGAGGAACAAAGCTTTTTAATGACAGAATCAGACACAACCAGCATAGACGGCAAAATGATTCCCAGCATTCTCGGAGAGGGAGAGGAGGAGGCCTGGCATGGTTCAGGTGTTGAAAGCTGCATTGTTGCTGATACTCAAATGAGCAGCTTGGCTCCTCCTCCTTCCCCGCCCATCATCCAGTGGGACATAGAAGTGCCAACGCATCTTGTTGGTCGATTGATCGGGAAGCAGGGAAAGTTTATGAACTTCCTCAAGCAGAGCTCTGGAGCAAAGATCTACGTCTCCACCCTGCCGTTCACTCACGATATTCAAATCTGCCACATTCAGGGCTCACAACAGCAGGTGGATGAAGCTCTCTCTCTTGTCAGGAAGAAGTTCAAAGATCTGGATCTGAGTAATTGTGCTCCTCTGCCCTGCCTGCCCATCACATCCTGGCTGCTGCTTCCTCAGGATGTGTTTGTGGAGGTGATGGTGTCGCGGGTGGAGGCGGCTCATCATCTGTTCGTTCATCAGCACAGTCATCCATCTCACCAGGTGCTTCCCACACTCATACAGGCCATGCAGCTCTGCTACTCTCAGCCGGGGTGTCCTAGCCTGCCCACTCCTGTTGAAgTGGGTGTGGTCTGTGCCGCTCCGGTAACAGGAAGTGGCTGGCAGAGAGCACAGGTCATTCAGTATGATGGAGAGACTGGCACCACTCATATCAGATATGTAGATAGCGGAGGATACGACACCGTGAACAGCACCACCCTCAGGCAGATCAGGTCAGACTTTGTGACGTTACCTTTCCAGGCTGCAGAGGTTCTGCTGGACAATATCATGCCTTTGCCAGGTGATGAGGAGTTTTCTCTGGAAGCCAAAGAAGCACTGGAGGAATCAACTGCTAATGTGGCCCTAATTCTAAAGGTGACTGGCAGTCAAGATGGACTTCCTCTGGTGCACCTGTGGAAACAGGCAGGAGACGAGATGGTTCTGATCAACAGATCACTGGCTGATCAAGGGTTTTTCAGCTGGTTTGACACTCAGTGATCCTCCCAACACCCATTCACACCGTAAATCCTCTTTTACACTTAAGTACATTTGTTTGTTGTACGGAGATTGTGTTGGAAACctcatttttgaatatttttatttaaaatgttgatatgatataaaatgttattatgaTGTTATTTAACAGAACATTGAATTAATTTATAATCCCAGCATGCATCGCAGAGTAAATCTGACTTAATGCAGTACACCAAACTGCTCGTAGGATACTGGTGTTAATATTGGACTGTTTTCTCAGATGGTCTCTTAAATGATGTTGGGTTGAAAGCTTGTGTTATGCTGAGGTATTTTGATATTGAggtatgttgtttttgttttgtagtcATTTGATTTGTTAGCTCTCAGTtttgtatttagttgtgtttgagGAAGATAAGAGTGATGATGGTGCTCTCTGACTGAACTCTATACTTTTACACTGACGCTGCCAAACATCTCACTGCTGTTGGAGTAAAAGGTCTGTGGAAATCACAAA

Function

symbol description
akap1a Predicted to enable RNA binding activity and protein kinase A regulatory subunit binding activity. Predicted to act upstream of or within regulation of protein kinase A signaling. Predicted to be located in mitochondrion. Orthologous to human AKAP1 (A-kinase anchoring protein 1).

GO:

id name namespace
GO:0010738 regulation of protein kinase A signaling biological_process
GO:0005739 mitochondrion cellular_component
GO:0034237 protein kinase A regulatory subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5980 Predicted to enable RNA binding activity and protein kinase A regulatory subunit binding activity. Predicted to act upstream of or within regulation of protein kinase A signaling. Predicted to be located in mitochondrion. Orthologous to human AKAP1 (A-kinase anchoring protein 1).

Ensembl:

ensembl_id ENSDARG00000089802

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004426 True 2523 mRNA 0.45 12 37400838 37415223

Neighbor

gene id symbol gene type direction distance location
XLOC_002323 nf1b coding upstream 5881 37268854 ~ 37394957 (+)
XLOC_002322 ksr1a coding upstream 143849 37173029 ~ 37256989 (+)
XLOC_002320 cuedc1a coding upstream 233387 37137464 ~ 37167451 (+)
XLOC_002321 CT027794.1 coding upstream 253054 37147669 ~ 37147784 (+)
XLOC_002319 vezf1a coding upstream 274276 37083654 ~ 37126562 (+)
XLOC_002325 NA coding downstream 63022 37478245 ~ 37478556 (+)
XLOC_002326 msi2a coding downstream 85011 37500234 ~ 37784024 (+)
XLOC_002327 NA coding downstream 450196 37865419 ~ 37889561 (+)
XLOC_002328 bhlha9 coding downstream 511877 37927100 ~ 37928125 (+)
XLOC_002329 wscd1b coding downstream 566248 37981471 ~ 38008370 (+)
XLOC_002317 NA non-coding upstream 336448 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding upstream 440148 36960576 ~ 36960690 (+)
XLOC_002315 CU694807.1 non-coding upstream 667827 36726238 ~ 36733011 (+)
XLOC_002299 BX088524.1 non-coding upstream 1112335 36287841 ~ 36288503 (+)
XLOC_002330 NA non-coding downstream 609822 38025045 ~ 38034835 (+)
XLOC_002332 NA non-coding downstream 1017115 38432338 ~ 38433209 (+)
XLOC_002333 BX000451.1 non-coding downstream 1073485 38488708 ~ 38488829 (+)

Expression


Co-expression Network