XLOC_002319 (vezf1a)


Basic Information

Item Value
gene id XLOC_002319
gene name vezf1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37083654 ~ 37126562 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004416
GAGACGCGATGATGGAGCAGAGCTGGAGCTCTTTCTTATTCCAGCAGGCTAATGAAGCCCTTCACCACCAGCACCAGGTGGCCCCAAACAGCCTGCTGCCGCTGCTGAACTCTGAGCCACAGGACCAGAAGCCTGTGATGCCCATTCCCCTGGACCACAAACCCCCCGTCAGCGCTGCAGACCTCCTCAAAGACAATGTCGTCAGCGGGACAGGTGGAGGAGGTGGTGGCGGCAATGCTGGTCCAATGGTTGTAGTCAAAAAAGAGCACAAAAGCAAAACGCCCTTCATCTGCGGCTACTGCAACAAGGCCTTCCGCGACAGCTACCACCTCCGCAGACACGAGTCCTGCCACACCGGCATCAAAATGGTATCCAGACCCAAAAAAACGGCACAGGCGGCGCCCACAATGGTCCCGCTCATTTCCAGCATGTCTCGTGAAAGCACCGGCGACCCTTCGTACATCTCCACTGTTGCTGGAATCCTTTCGACAGCCACTACTTCAACTTCCTCTGCTTCGACTGTCATGTCACCAACGTCCATGTCTAACGTGACTCAGCACAGCGCCCCCAAGAAACCACCCAAGCCCGTCAAGAAGAACCATGGCTGTGAAATGTGCGGCAAGGCCTTCCGGGACGTTTATCATCTGAACAGGCACAAGCTGTCGCACTCGGACGAAAAGCCCTTCGAGTGTCCGATCTGCCAGCAGCGCTTCAAGAGGAAAGACCGCATGACGTATCACGTACGCTCGCATGATGGAGGTGTCCACAAACCTTACGTATGTTCGGTCTGCGGAAAGGGATTCTCCAGACCCGACCACCTCAGCTGCCACGTGAAGCATGTTCATTCCTCAGAGAGACCTTTCAAATGTCAAGTAACGGGCCTGCACATCAGCCTTTGCCACCAAAGACAGACTTCGGTCACATATGATTCGGCACGAGGGGAAAGTCACTTGCAACGTGTGTGGAAAGATGCTGAGCGCCGCCTACATCACCAGCCACTTAAAAACACACGGCCAGAGCAACTTCAACAACGCCTGTAACAAAGACAACACTGAAGTCTGCAACTCTGCCTCCAGCACGCCGGTCACGCCTGCAGCCCCCATCACCTCTACAATGAACCGTGGAAACACCAGCAACCCCGTAACCATCGCAGCCCAGATGAACATTTCCACCAACACCGTCAACATCACGTCACCAGTCAGCCTGCAGCACCAAGTTACCATCACCGGCCCTGTAAACATCGCCTCTGTCAACATCCCAGCCTCAGCGCCCATGAACATCGCCCATCCGGTGGCCATCACCACGCCAATGCCTATGAACATCGCCACCCCGCTCAACATCGCCATGAGACCTATGGACAGCATGCCGTTTCTGTCTCAAGTCCTGCCGTCTTCTCCGTG
>TCONS_00004417
ATGATGGAGCAGAGCTGGAGCTCTTTCTTATTCCAGCAGGCTAATGAAGCCCTTCACCACCAGCACCAGGTGGCCCCAAACAGCCTGCTGCCGCTGCTGAACTCTGAGCCACAGGACCAGAAGCCTGTGATGCCCATTCCCCTGGACCACAAACCCCCCGTCAGCGCTGCAGACCTCCTCAAAGACAATGTCGTCAGCGGGACAGGTGGAGGAGGTGGTGGCGGCAATGCTGGTCCAATGGTTGTAGTCAAAAAAGAGCACAAAAGCAAAACGCCCTTCATCTGCGGCTACTGCAACAAGGCCTTCCGCGACAGCTACCACCTCCGCAGACACGAGTCCTGCCACACCGGCATCAAAATGGTATCCAGACCCAAAAAAACGGCACAGGCGGCGCCCACAATGGTCCCGCTCATTTCCAGCATGTCTCGTGAAAGCACCGGCGACCCTTCGTACATCTCCACTGTTGCTGGAATCCTTTCGACAGCCACTACTTCAACTTCCTCTGCTTCGACTGTCATGTCACCAACGTCCATGTCTAACGTGACTCAGCACAGCGCCCCCAAGAAACCACCCAAGCCCGTCAAGAAGAACCATGGCTGTGAAATGTGCGGCAAGGCCTTCCGGGACGTTTATCATCTGAACAGGCACAAGCTGTCGCACTCGGACGAAAAGCCCTTCGAGTGTCCGATCTGCCAGCAGCGCTTCAAGAGGAAAGACCGCATGACGTATCACGTACGCTCGCATGATGGAGGTGTCCACAAACCTTACGTATGTTCGGTCTGCGGAAAGGGATTCTCCAGACCCGACCACCTCAGCTGCCACGTGAAGCATGTTCATTCCTCAGAGAGACCTTTCAAATGTCAAGTAACGGCCTGCACATCAGCCTTTGCCACCAAAGACAGACTTCGGTCACATATGATTCGGCACGAGGGGAAAGTCACTTGCAACGTGTGTGGAAAGATGCTGAGCGCCGCCTACATCACCAGCCACTTAAAAACACACGGCCAGAGCAACTTCAACAACGCCTGTAACAAAGGTTATGCCCTTTCAGTCCATGGAGCAAGGCATtctgGAGATTGGCAGTGGAACCACTCAGGGCTCCGAAAAGACAACACTGAAGTCTGCAACTCTGCCTCCAGCACGCCGGTCACGCCTGCAGCCCCCATCACCTCTACAATGAACCGTGGAAACACCAGCAACCCCGTAACCATCGCAGCCCAGATGAACATTTCCACCAACACCGTCAACATCACGTCACCAGTCAGCCTGCAGCACCAAGTTACCATCACCGGCCCTGTAAACATCGCCTCTGTCAACATCCCAGCCTCAGCGCCCATGAACATCGCCCATCCGGTGGCCATCACCACGCCAATGCCTATGAACATCGCCACCCCGCTCAACATCGCCATGAGACCTATGGACAGCATGCCGTTTCTGTCTCAAGTCCTGCCGTCTTCTCCGTGG

Function

symbol description
vezf1a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in immature eye and nervous system. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-4 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in immature eye and nervous system. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

Ensembl:

ensembl_id ENSDARG00000008247

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004416 False 1400 mRNA 0.56 5 37083654 37126561
TCONS_00004417 True 1464 mRNA 0.55 7 37083662 37126562

Neighbor

gene id symbol gene type direction distance location
XLOC_002317 NA coding upstream 19264 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 coding upstream 122964 36960576 ~ 36960690 (+)
XLOC_002316 NA coding upstream 305140 36741502 ~ 36778514 (+)
XLOC_002315 CU694807.1 coding upstream 350643 36726238 ~ 36733011 (+)
XLOC_002314 rab6a coding upstream 371953 36695597 ~ 36711701 (+)
XLOC_002320 cuedc1a coding downstream 10902 37137464 ~ 37167451 (+)
XLOC_002321 CT027794.1 coding downstream 21107 37147669 ~ 37147784 (+)
XLOC_002322 ksr1a coding downstream 46467 37173029 ~ 37256989 (+)
XLOC_002323 nf1b coding downstream 142292 37268854 ~ 37394957 (+)
XLOC_002324 akap1a coding downstream 274276 37400838 ~ 37415223 (+)
XLOC_002294 NA non-coding upstream 702611 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding upstream 795151 36287841 ~ 36288503 (+)
XLOC_002325 NA non-coding downstream 351683 37478245 ~ 37478556 (+)
XLOC_002327 NA non-coding downstream 738857 37865419 ~ 37889561 (+)
XLOC_002330 NA non-coding downstream 898483 38025045 ~ 38034835 (+)
XLOC_002332 NA non-coding downstream 1305776 38432338 ~ 38433209 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17903097_17911970 VEZF1, VEZF1A coding CI01000304 null 17903097 ~ 17912215 (+)