RNA id: TCONS_00004416


Basic Information

Item Value
RNA id TCONS_00004416
length 1400
RNA type mRNA
GC content 0.56
exon number 5
gene id XLOC_002319
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37083654 ~ 37126562 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGACGCGATGATGGAGCAGAGCTGGAGCTCTTTCTTATTCCAGCAGGCTAATGAAGCCCTTCACCACCAGCACCAGGTGGCCCCAAACAGCCTGCTGCCGCTGCTGAACTCTGAGCCACAGGACCAGAAGCCTGTGATGCCCATTCCCCTGGACCACAAACCCCCCGTCAGCGCTGCAGACCTCCTCAAAGACAATGTCGTCAGCGGGACAGGTGGAGGAGGTGGTGGCGGCAATGCTGGTCCAATGGTTGTAGTCAAAAAAGAGCACAAAAGCAAAACGCCCTTCATCTGCGGCTACTGCAACAAGGCCTTCCGCGACAGCTACCACCTCCGCAGACACGAGTCCTGCCACACCGGCATCAAAATGGTATCCAGACCCAAAAAAACGGCACAGGCGGCGCCCACAATGGTCCCGCTCATTTCCAGCATGTCTCGTGAAAGCACCGGCGACCCTTCGTACATCTCCACTGTTGCTGGAATCCTTTCGACAGCCACTACTTCAACTTCCTCTGCTTCGACTGTCATGTCACCAACGTCCATGTCTAACGTGACTCAGCACAGCGCCCCCAAGAAACCACCCAAGCCCGTCAAGAAGAACCATGGCTGTGAAATGTGCGGCAAGGCCTTCCGGGACGTTTATCATCTGAACAGGCACAAGCTGTCGCACTCGGACGAAAAGCCCTTCGAGTGTCCGATCTGCCAGCAGCGCTTCAAGAGGAAAGACCGCATGACGTATCACGTACGCTCGCATGATGGAGGTGTCCACAAACCTTACGTATGTTCGGTCTGCGGAAAGGGATTCTCCAGACCCGACCACCTCAGCTGCCACGTGAAGCATGTTCATTCCTCAGAGAGACCTTTCAAATGTCAAGTAACGGGCCTGCACATCAGCCTTTGCCACCAAAGACAGACTTCGGTCACATATGATTCGGCACGAGGGGAAAGTCACTTGCAACGTGTGTGGAAAGATGCTGAGCGCCGCCTACATCACCAGCCACTTAAAAACACACGGCCAGAGCAACTTCAACAACGCCTGTAACAAAGACAACACTGAAGTCTGCAACTCTGCCTCCAGCACGCCGGTCACGCCTGCAGCCCCCATCACCTCTACAATGAACCGTGGAAACACCAGCAACCCCGTAACCATCGCAGCCCAGATGAACATTTCCACCAACACCGTCAACATCACGTCACCAGTCAGCCTGCAGCACCAAGTTACCATCACCGGCCCTGTAAACATCGCCTCTGTCAACATCCCAGCCTCAGCGCCCATGAACATCGCCCATCCGGTGGCCATCACCACGCCAATGCCTATGAACATCGCCACCCCGCTCAACATCGCCATGAGACCTATGGACAGCATGCCGTTTCTGTCTCAAGTCCTGCCGTCTTCTCCGTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040108-4 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in immature eye and nervous system. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

Ensembl:

ensembl_id ENSDART00000132162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005928 lncRNA upstream 19264 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005926 lncRNA upstream 19720 36805036 ~ 37063934 (+) False XLOC_002317
TCONS_00005927 lncRNA upstream 19720 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00004414 lncRNA upstream 100036 36805085 ~ 36983618 (+) False XLOC_002317
TCONS_00005727 lncRNA upstream 172155 36870984 ~ 36911499 (+) False XLOC_002317
TCONS_00004420 lncRNA downstream 18537 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005929 lncRNA downstream 351684 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 373685 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 373685 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 373914 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004413 mRNA upstream 305140 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004412 mRNA upstream 334003 36741502 ~ 36749651 (+) False XLOC_002316
TCONS_00004407 mRNA upstream 371953 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004408 mRNA upstream 373034 36695647 ~ 36710620 (+) False XLOC_002314
TCONS_00004402 mRNA upstream 410266 36662640 ~ 36673388 (+) False XLOC_002313
TCONS_00004418 mRNA downstream 10903 37137464 ~ 37167441 (+) False XLOC_002320
TCONS_00004419 mRNA downstream 18446 37145007 ~ 37167451 (+) False XLOC_002320
TCONS_00004422 mRNA downstream 46468 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004423 mRNA downstream 55219 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004424 mRNA downstream 56065 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004415 other upstream 122964 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 414620 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 640807 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 795151 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 923367 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004421 other downstream 21108 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 1362147 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1421528 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1557105 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2565816 39692377 ~ 39699487 (+) True XLOC_002355

Expression Profile

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