XLOC_002289 (BX088524.3)


Basic Information

Item Value
gene id XLOC_002289
gene name BX088524.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36158967 ~ 36160287 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004370
gtaaaaatcggagggcttttctggattgctttttaaaacagtccattgggtttagggaagtgtggtgggtgggtcaatcggtgcttttgaaaacactattggttgggtttagggaaggaggagagtgggaTCAGTTAGTCagccgacagcggcctctggtggatttacgtaggAACAACAGCATGAAATGGCACTCGCAGGAgaaattttagatctcaaaaagcgtacacagcggcctctagtggattcatagaaacaaaaactgcaaaaaaaaaaaaaaaacgtagctcctgggatgtatttggtgctctccagaaatgtatacagcagtatgttttcagaatgagactgtGTTGTAGAAATCACTTGAGGGCTAGTAGAtgatgagtacattttcatttcaggGTGAACTACACCTTTAATGGTTCTGGATTTTGCAGGTTACAAATGCCATTGAGATGAATGGGAATGCTAGCTTTCTCCTGGTATTATAAATCTCTCTGCAAGCAATATAAAGTATTATATCATGGTTCATGTGACTTAAACTGAAGCTTTCTGGCTGTATTTCATAACCAGAAATTCCCACATCAATACATCAACAAGGAGGGGGAAAACAGGGCTTGATAAGCAATTTCTGAGCTTTAAGTGTTATTTGTATTCGAGGCCAAAATGATAGTGGcctaaatgtaaatacatttatctttttttattgttctaaTATGTAAACAACAAGCTCAAGTAATATAGGAGAATACAAGAAATGTTATTTCTtcttaatgaatacatttatttccCTAATGCATTTTACGTATTACACTTGCTGCAACAATTTGTGTGAggtacaaacacaaacaaacatgcataaCATTTCCCTTTAAATAggcaatattaaaatacatacatttgttGCATCTCTTGTTGAATAGTATGAGAATGTGCATTGTGGTGAATGGATGCATAAAGAGTATGTGCTGCCTGGACTACTGCTTGAATTTTACTCTCTCTGTTACTCTCACTTTTTTACCCTATAACCATGTATACAGTGCCAAGTCCAGACACTCTTGGTCTAGAGTGgaacaaaactatttattttatttaaaacattttttgcaatCTTCAAATCTAGACCTTTGATTTAGTTTATGTGTATGGATATTTGACTGTACAAAAGATGTGCAGTTCTCCCCTTCATCAGCTCTTTGCATTTTTCAAATGACTGTGATGCAGCCCAAATAATCATGTGAAATTACATTTAGAGCAGTGATATAATATCATTTTATAAACGAATGACTTGCATCCTCAATAAAACTCAAGAAATCCT
>TCONS_00004371
GTGTTATTTGTATTCGAGGCCAAAATGATAGTGGcctaaatgtaaatacatttatctttttttattgttctaaTATGTAAACAACAAGCTCAAGTAATATAGGAGAATACAAGAAATGTTATTTCTtcttaatgaatacatttatttccCTAATGCATTTTACGTATTACACTTGCTGCAACAATTTGTGTGAggtacaaacacaaacaaacatgcataaCATTTCCCTTTAAATAggcaatattaaaatacatacatttgttGCATCTCTTGTTGAATAGTATGAGAATGTGCATTGTGGTGAATGGATGCATAAAGAGTATGTGCTGCCTGGACTACTGCTTGAATTTTACTCTCTCTGTTACTCTCACTTTTTTACCCTATAACCATGTATACAGTGCCAAGTCCAGACACTCTTGGTCTAGAGTGgaacaaaactatttattttatttaaaacattttttgcaatCTTCAAATCTAGACCTTTGATTTAGTTTATGTGTATGGATATTTGACTGTACAAAAGATGTGCAGTTCTCCCCTTCATCAGCTCTTTGCATTTTTCAAATGACTGTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004370 False 1321 processed_transcript 0.36 1 36158967 36160287
TCONS_00004371 True 576 transcribed_unprocessed_pseudogene 0.32 1 36159612 36160187

Neighbor

gene id symbol gene type direction distance location
XLOC_002288 waif2 coding upstream 2309 36150911 ~ 36156658 (+)
XLOC_002287 smyd4 coding upstream 52821 36092564 ~ 36106146 (+)
XLOC_002286 katnal1 coding upstream 95553 36037977 ~ 36063414 (+)
XLOC_002285 hmgb1a coding upstream 126929 36026576 ~ 36032038 (+)
XLOC_002284 rtn4rl1a coding upstream 199396 35952532 ~ 35959571 (+)
XLOC_002290 or108-3 coding downstream 18426 36178713 ~ 36180091 (+)
XLOC_002291 or108-2 coding downstream 24464 36184751 ~ 36186346 (+)
XLOC_002292 or108-1 coding downstream 34240 36194527 ~ 36196218 (+)
XLOC_002293 COA4 coding downstream 37681 36197968 ~ 36200051 (+)
XLOC_002294 NA coding downstream 40897 36201184 ~ 36381043 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 513832 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 514169 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 744690 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 916939 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 1100406 35054311 ~ 35058561 (+)
XLOC_002299 BX088524.1 non-coding downstream 127554 36287841 ~ 36288503 (+)
XLOC_002315 CU694807.1 non-coding downstream 565951 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 644749 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 800289 36960576 ~ 36960690 (+)

Expression


Co-expression Network