XLOC_002286 (katnal1)


Basic Information

Item Value
gene id XLOC_002286
gene name katnal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36037977 ~ 36063414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004366
AGTGCGCGTCTTCCCGCGGCCATGGCAACATCAGCAGGCAACGGACTGAGGACCAGCCGAATGTAAAAGTGCCTTGAATAAAGGACTCATGGCCTGATATCAGCAGCTCTCAAACTAGAATCTCTGAACTCCAGTCGTGTTGAAGAAACATTCTGATTTCTCTCTCATCATGAATCTGACTGAGATCTGCGACAACGCTAAGAAAGGAAGAGAATACGCGCTTTTGGGGAACTATGACTCTTCTATGGTGTACTATCAAGGTGTTATACAGCAGATCCATAAGCACTGTCAGTCCCTCAGAGATCCTGCACAGAAAGTCAAATGGCAACAGGTACGGCAGGAACTGGCAGAGGAATATGAGCAGGTGAAAAGCATTGTAAGCACCCTGGAGAGTTTCAAGGTGGACAAAGCGGTTGATTTCCCCAACCCTGTGCCTGAGGAGGGCCCGAGGGACCCTGATGTGTGGCCTCCTCCAACCCCAGCGGAGCACAGAGGACCTGTCCAGGTGAAGAAACCAGTCCCTTTATCAAAGCCCCAGAGGAAAGAGTCTCCCGGGATGCAGCATCGTGGAGCTGTGGGCAGAGGTCAGGCCAACATTAAACCTGACAGACCCAACACCCGTGACGGACGTGGAAATAAGGCTAAGGAGGAAAAGagtaaGAGAAATGCTCAGGAGGGCGCTGCTGATGTGGAACAGAAGAAGTTTGATGGCACAGGATATGACAGCGATCTGGTGGATGCACTGGAGAGAGACATTGTGTCGCGCAATCCCAATATCCACTGGGATGACATAGCAGATCTGGAAGATGCCAAAAAGCTGCTGAGAGAGGCTGTGGTCCTGCCCATGTGGATGCCAGACTTCTTCAAGGGGATCCGCCGTCCGTGGAAGGGTGTGCTGATGGTGGGGCCTCCGGGCACTGGAAAGACCATGCTGGCGAAAGCGGTTGCGACTGAATGTGGCACAACATTTTTCAACGTGTCGTCCTCCACACTGACCTCAAAGTACAGGGGCGAGTCTGAGAAACTGGTGCGGCTCCTCTTTGAAATGGCCCGTTTTTATGCTCCCACAACCATTTTTATTGATGAGATCGACTCTATATGTGGCAGACGCGGCACATCAGATGAACATGAGGCGAGTCGCAGAGTCAAGTCAGAGTTACTGGTGCAGATGGACGGTGTAGGAGGCGCTCAAGAGAGTGAAGACCCCTCTAAAATGGTGATGGTCCTGGCAGCCACTAACTTCCCCTGGGACATCGATGAGGCTCTGAGGAGACGACTAGAGAAGAGGATCTACATCCCGCTGCCCACTGCTAAGGGCCGGGCAGAGCTGCTGAAGATCAATCTGAGAGAAGTGGATGTGGCGTCTGATGTGGACCTAACTGTCATCGCTGAGAAGATTGAGGGTTATTCGGGTGCTGACATCACCAATGTCTGCAGAGATGCGTCGATGATGGCGATGCGCAGGAGGATCCAGGGTTTGAGTCCTGAGGAGATACGAGCTCTTTCTAAAGACGAGCTTCAGATGCCGGTCACCATGGAGGACTTTGAGCTCGCACTCAAAAAGATCTCCAAATCCGTCTCAGCGGCCGACCTGGAGAAATATGAGTCCTGGATGTCCGAATTTGGGTCTGTGTGAAGACAAATCACCGCTACAAGATAAGTGTGAATGTGGGAGAACTCACTCTGTACCAATacttgggggtgggggggggggggagacaTGGTGTGATGTCTGTAGagactttttaaatgcaaaaatgctACTGAAAACTAGTGGAGCCAGATGCGTTTGGGCATGTTTGGACTGAGAAAAGACGCACCTTTAATTGTCAGAAATGCACTACTGATCTGTGTTTGACACGGAGCCATCTTTACATGTTTCTAGCATCTCagtttcaagacatttctaactTCATTCTCCACTAACAGATGGAAATCGGCTGAGTTGTCTTAAGTTTCAATTTTGTGAAAATAATACTTGACAAGGGAGAGCAGCATAATCTTGGTACTGTgctggatgttttttttatgttttattagtgTTTAGAGATGTTGTgttcttatgtgttttatttgataattataataaattaacatttattctcTACTT

Function

symbol description
katnal1 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization and microtubule severing. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in nervous system and yolk syncytial layer. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1).

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0007049 cell cycle biological_process
GO:0051013 microtubule severing biological_process
GO:0051301 cell division biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-141 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization and microtubule severing. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in nervous system and yolk syncytial layer. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1).

Ensembl:

ensembl_id ENSDARG00000099156

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004366 True 2110 mRNA 0.49 11 36037977 36063414

Neighbor

gene id symbol gene type direction distance location
XLOC_002285 hmgb1a coding upstream 5939 36026576 ~ 36032038 (+)
XLOC_002284 rtn4rl1a coding upstream 78406 35952532 ~ 35959571 (+)
XLOC_002283 dre-mir-132-2 coding upstream 392842 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 coding upstream 393179 35644719 ~ 35644798 (+)
XLOC_002281 zdhhc20a coding upstream 457891 35554219 ~ 35580086 (+)
XLOC_002287 smyd4 coding downstream 29150 36092564 ~ 36106146 (+)
XLOC_002288 waif2 coding downstream 87497 36150911 ~ 36156658 (+)
XLOC_002289 BX088524.3 coding downstream 95553 36158967 ~ 36160287 (+)
XLOC_002290 or108-3 coding downstream 115299 36178713 ~ 36180091 (+)
XLOC_002291 or108-2 coding downstream 121337 36184751 ~ 36186346 (+)
XLOC_002277 NA non-coding upstream 623700 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 795949 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 979416 35054311 ~ 35058561 (+)
XLOC_002294 NA non-coding downstream 137770 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding downstream 224427 36287841 ~ 36288503 (+)
XLOC_002315 CU694807.1 non-coding downstream 662824 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 741622 36805036 ~ 37064390 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17571701_17576895 KATNAL1 coding CI01000304 null 17571224 ~ 17576895 (-)