XLOC_002271


Basic Information

Item Value
gene id XLOC_002271
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35236348 ~ 35242028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005920
cATTACAATAAAATAGATTGGACTTATTTTGGATAAGCTttgttaaatgaatataaaagatCTTGGATAGACAGAAGCTGGATTAATGGTGAATGACACATTCATTGACATGTCTTGAAGTGTCAACATTTGCTCTTAGTACGGTATTAGAGTCCATACTACGtgcatattaattaattcattaacatAATTATTCACATTTCGATTATGCTGTGATGCAGTAGAGTACATAAATAGATCCCATAACTTATATCATAGGAACTGAGACTATATCCAAACTCAAACCATAAGTTTACAGAAATCATAGGTACATTTTTCATCAGCTGTCATAGTCTGCATGATAGTAAATAACCCACATTACATTTCCAAAACGCGAACTTCTTTTTAAAGATGTCACTAAACGTATTTAACGTGTAGTTATTACCTTTGAATGGAAAAAGACGCGCAGGTTGATGTCTCCTCTTCTTCAAAACCGCGACTTTACGCAAAACAAAAGGTGATcattcttcacaacacaaagttTCCAGGTATCTTCCACGCACACCGAGAGCAGCAGCGCTCCGTAAATACTGCACGGTCGCGCATCGGGCCTCACAATACAAGCTCCCAGTTTGATTGACAACAAGGCCAGCCAATCGTTAGGACGAAACGGCCTAGCAACAATACGCCGATTGGCCAACCTAAAAAGTGGACGGACCAATGAGCGAGCGCAAGGAATATGCAGGCGAAAAACCAAAACATTCGTTATCTTTGTAATGTGTCTGTAGTTAGCGAGTAGTAAACACTAAAGCACAAGTATGTAACAGGTAAATCATAATAGTTTATCAAATATTAAGATTTTAGACACTATTTTTACACGTGACAATAACAAAGATGCACCAGCCTCATCATAATAATTAAATAGCGCCTCTCTGCGTCGTGAATTTGCTTGATATTTTGTGTAAACTTGATAATTTATTACGTTTCTAAAGCAAATGATAAAGCAATGTATGTTCCTCATTTTACTGTACTCttatattagcattttattagatGAATGAATTCAGGCAAAGattattttggttgtttttatatataagaCTATAGACATTGCTTTAGTGAACGGAGTTGTTAATATGTAACTTGTTAACTTAGTTGTGGAGATGTCTGTTTCCCCTCGCACTTCAGAGACCGACGGATTCCTGCTTGAAGAGAACTAGTCGTGTTGGCACGCAGAATGCCTCTCAACACCCTGAAGTTAGCCAGTGGCTGGTTCTCCTTTGGAGGATAGCAGGGACCACGATCTGTCACGTAGGCATAAGGGAAGCGAAGCACCCAGAGTCCATCAGAGGGCAGCACCACTTCAGGTTGCTCTGGATGGAAGATGGGACAGGGAGGGAGACCTGGCTGGACCTATAAGAGAAGACACACACAGAACAACAATCTCAAGAGGAGCATCAGGGACAACAACAAAAAGTCGAGCCAGCTGAGCGTAATGTGGCTTGATGCCTCGTCCCTGAGCAGGAGAGGGAATATACAGAGGCATATCCGAATTCAAGCATCTGGTTGCAGGCTCCTTTGGTCCACCTTGTCCAAGCACTTTAACCACTTTATCAGGGCCAGAACTGAGGAAGCGGCGCCCTCTGCTGTCCTCATACTCAAAACCAACAAAAGCACGAGCTACATCATCCCGTCTGCGCCCTCGACCGATTCCTCCAGCGCTGCCTCGCTTTCCAGCTGATGCTTTATTTGGTGCCGGCCAGGACGCCGGGCCTCCGTCCAGAGGTTCAAGGGATCCCACGTCTTCCTCAGATCGGCTTCGAATCACTACATCCCACGGCAAGAGGAAAGCAGAGCCTGGGAGGAATCCAGGTTGCTCTAAACCAGTGAGGCTGTTGTAGGATTTGGCCGGACCAAGCTTTACAAGAGACCAGCTAGAGAATTTGGGTAACAATCCTTTCGGGCATCCAGAATGCAGCATCCCGGGAAGATACTCCACAGTGGAGGGCTGTCGGTCCACCAAGCTTGGTCTCTTCTCCTGTCCTTCTGCTCCGTCAGCGTATGTTCCAAGGCTGTCCGTTGACTGGCCCAAGCTGAGAGCGAGACTTAGACTCGTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005920 True 2097 lncRNA 0.44 3 35236348 35242028

Neighbor

gene id symbol gene type direction distance location
XLOC_002270 nsun5 coding upstream 72736 35152928 ~ 35163612 (+)
XLOC_002269 NA coding upstream 177787 35054311 ~ 35058561 (+)
XLOC_002268 exosc8 coding upstream 224846 35002786 ~ 35011502 (+)
XLOC_002267 rfxap coding upstream 274590 34958583 ~ 34961758 (+)
XLOC_002266 CT573139.1 coding upstream 284483 34937548 ~ 34951865 (+)
XLOC_002272 styxl1 coding downstream 15623 35257651 ~ 35262368 (+)
XLOC_002273 tmem120a coding downstream 23055 35265083 ~ 35275350 (+)
XLOC_002274 pora coding downstream 33937 35275965 ~ 35312885 (+)
XLOC_002275 si:dkey-259j3.5 coding downstream 87723 35329751 ~ 35338595 (+)
XLOC_002276 si:dkey-259j3.5 coding downstream 105965 35347993 ~ 35361366 (+)
XLOC_002263 NA non-coding upstream 996510 34239060 ~ 34239838 (+)
XLOC_002260 BX548044.3 non-coding upstream 1016107 34175468 ~ 34220241 (+)
XLOC_002277 NA non-coding downstream 127564 35369592 ~ 35414277 (+)
XLOC_002282 BX663516.1 non-coding downstream 402691 35644719 ~ 35644798 (+)
XLOC_002283 dre-mir-132-2 non-coding downstream 402989 35645017 ~ 35645135 (+)
XLOC_002289 BX088524.3 non-coding downstream 916939 36158967 ~ 36160287 (+)
XLOC_002294 NA non-coding downstream 959156 36201184 ~ 36381043 (+)
XLOC_002261 NA non-coding upstream 1043042 34190542 ~ 34193306 (+)

Expression


Co-expression Network