XLOC_002273 (tmem120a)


Basic Information

Item Value
gene id XLOC_002273
gene name tmem120a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35265083 ~ 35275350 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004345
GCTTTCACATGACGGACGTCCGTCAAAGATAGCGAGTCGTTACGACAGCTGCAGACAAGAATCAGACCGTTATTCTCTTCACTCTTATCTGTGAAACACTTCTTGTTTTCCTCAAATACACTCTCTGGAAATGTTATTTAATCCTACTGGCCTGACCGAATGTTTACAAGAATGGGAGGATTTGGAAAAAGACTACCAGCAGATTCAGGACACGCATCGACATTACAAACATAAGCTGGAGGAAGTTTCGAAATTGCAAGAAAGCTGTTCCTCCTCCATTGCACGGCAGAGGAAAAAGTTAAAGGATCTCTCAGAATCCCTGGAGGAatgCAAAGGGGCGGTGAATCCAGAAGATGTAAATAAAATAGACGACATCCAAGAGTCTATAAAAGAAAGACCAAATGTCTTTTTTGAGATGGAGGCCTTCTTGCCCAAGAAAAACGGGTTATACCTCAGTCTTGTTCTAGGAAATGTGAACGTCACATTACTTAACAAGCAATCCAAGTTTGCCTATAAAGACGAGTATGAGAAATTCAAACTATACTTGACCGTGCTGCTCTTGTTTTTTTCATTCACCTGCCGGTTTTTGGTCAGCTACAGGGTTGTAGATGCACTATTCAACTTCCTGTTGGTGTGGTACTATTGTACACTGACGATAAGAGAAAGCATCCTCATTAATAATGGGTCTAAGATCAAGGGCTGGTGGGTGTTTCAACACTATGTTTCAACATTTCTCTCTGGAGTAATGCTGACCTGgCCTGATGGCGAGCTGTATCAGATGTTCAGAAATCAGTTCCTGTCTTACTCCATGTATATAAattttgttcagtttttccagTACTATTACCAGAGTGGCTGCTTATACAGACTTAGAGCTCTTGGAGAAAGACACAACATGGACCTCACGGTTGAGGGGTTTCAGTCTTGGATGTGGAGGGGTCTCACCTTTCTCCTGCCTTTCCTTTTcttgggccatTTTTTTCAGCTTTATAATGGGATTACACTCTTCCAAATGACTCAGCTTCCAGAATGGAAAGAGTGGCAGGTTCTCATGTGTGGCTCTACTTTTCTCGTTTTGTTCATGGGAAACTTCTTCACCACTCTCGGTGTTGTTTACCACAAATACATGGATCAGGACAAAGCCAAAGGTTTATAGGCAACTGAACTCTTTACCAAGgcaatttaagctttatattattGATTTTTAACATGGTTATAAATGGGATTATTGTGCTATTCATGTCATTCTCATGACTCTCTGACTTAAATGTTTCTCCTGTTTGTGGTTCATCTTGACTAAATGGTGGTTTTTATAAACTTGTCTGAAGGCACAAGTGAAAGTCTTTtctttaaatctaaaaaatatatatttaatattttgttgtaaTATTTATTCAGTGAATAAACAGTTTTTCTATTAAATTCA

Function

symbol description
tmem120a Predicted to enable ion channel activity. Predicted to be involved in detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in prechordal plate. Orthologous to human TMEM120A (transmembrane protein 120A).

GO:

id name namespace
GO:0045444 fat cell differentiation biological_process
GO:0050966 detection of mechanical stimulus involved in sensory perception of pain biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-21 Predicted to enable ion channel activity. Predicted to be involved in detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in prechordal plate. Orthologous to human TMEM120A (transmembrane protein 120A).

Ensembl:

ensembl_id ENSDARG00000030914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004345 True 1426 mRNA 0.39 12 35265083 35275350

Neighbor

gene id symbol gene type direction distance location
XLOC_002272 styxl1 coding upstream 2715 35257651 ~ 35262368 (+)
XLOC_002271 NA coding upstream 23055 35236348 ~ 35242028 (+)
XLOC_002270 nsun5 coding upstream 101471 35152928 ~ 35163612 (+)
XLOC_002269 NA coding upstream 206522 35054311 ~ 35058561 (+)
XLOC_002268 exosc8 coding upstream 253581 35002786 ~ 35011502 (+)
XLOC_002274 pora coding downstream 615 35275965 ~ 35312885 (+)
XLOC_002275 si:dkey-259j3.5 coding downstream 54401 35329751 ~ 35338595 (+)
XLOC_002276 si:dkey-259j3.5 coding downstream 72643 35347993 ~ 35361366 (+)
XLOC_002277 NA coding downstream 94242 35369592 ~ 35414277 (+)
XLOC_002278 hhla2a.1 coding downstream 141749 35417099 ~ 35437624 (+)
XLOC_002266 CT573139.1 non-coding upstream 313218 34937548 ~ 34951865 (+)
XLOC_002263 NA non-coding upstream 1025245 34239060 ~ 34239838 (+)
XLOC_002261 NA non-coding upstream 1071777 34190542 ~ 34193306 (+)
XLOC_002282 BX663516.1 non-coding downstream 369369 35644719 ~ 35644798 (+)
XLOC_002283 dre-mir-132-2 non-coding downstream 369667 35645017 ~ 35645135 (+)
XLOC_002289 BX088524.3 non-coding downstream 883617 36158967 ~ 36160287 (+)
XLOC_002294 NA non-coding downstream 925834 36201184 ~ 36381043 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_16881934_16886577 T120A, TMEM120A coding CI01000304 null 16881934 ~ 16887522 (+)