XLOC_002278 (hhla2a.1)


Basic Information

Item Value
gene id XLOC_002278
gene name hhla2a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35417099 ~ 35437624 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004353
GAGCTTCACTGCTGTGTGAAACACTGACCGCACTCCTGCTGCAGCCTGAGGACATCAGTTCAGCCCAGACTAGCTGcagaacacacactctctcacgcCGGGGCTTTTGGCAACCTGTACGGCTGCTGTGACATGCTCTTGTCAAAGTCTAGGTTCGCGTGAGCTGCATCTTCTCTGAGGACTGTGTTCTTCCCTGCTCTTTCACATCTACTGGTGCAAATGCGAATGTTCAGTGGTACCAGCAGGAGGCGCTGGTCCTCAGTTTACCGCAAGCGGGACAGGGACCCAGCAATGGAAACATGCAGTTCATCAGCAACAGTGCCTCTGATGGCAACGCTTCGATCATGCTAAAAAAAGCAGATAAGACGAGTAAAGGACGATACAAATGTGTGGTCAACAATGTGACTCAGACGTATGTTATTGCCATGGTGGAAGCTCCCATCAGGATGATCTCCATCAACAGCAGTGAGTCGGGTTTGGTCCAGTGCTCCACCAGAGATGTGTATCCTGCGCCGGTGTTGCAGTGGAGCTCAGAGCCCGCCTCAGCTCCTGGTGTCCTGCAGCCTATCACCCGCATCAGTCCTGGAGGAAACGGCCTTTTCTCAGCCCAGAGTGTCTTAAAACTGCAGAACAACAGCCTTGAGCATGTCTATATGTGCACCATCACCTCTAAATATGAAACACAGACATGGACGGCGTCATTTAAGCCACAAGAAATTACCGGCTATACGGGGCAAGACCTGGTTATTCCATGCAAAGCTCCCAAGCACCTCCAGTTCTTATCTGCCGTCTGGACATTTACAAGAGCAAACAAAACCACAGACGTCCTGAAGTATGACAGCCGAACCCACACATTCAGCAGCTCACTGGATCATGTAAATCTACAGGAGAAGGACAGAGCTGTGATAGGAGACTTTTCTCTCGTCCTGAAGAAACCCGTGGCCTCAGAACATGCTGGCATCTACACATGTGCCTTCACTGGAGCAAAGACACAGCATCTGATACAGACACACGTCGACATCACTTCCTCCAGACAGGGGAAAGatTCTATGAAATATAATCTGTGGATGTTGGGTATCGTCATAGGATTAATCGTTCTTCTTGCCACCGTCTTGATTATAAAAAGATACAGAGCAAAGTCAAAAAGAAGTCCCGAAAATGCTCAAGAGGATGCAGAAATGCAAAGAATGAACGCAGACAAAGCAGCAGAAGATGCACAAGCGGGAATGAAACTTCTGACAGAAGCTTCAGCATCTCACAGTCAACCATCATGAGATACAAGAGAGAAACTATTTACAGGACTCACTGACAGACAGACTGTATTTCTATGCCATTTGAACAAGCACAACGTCACAGAGAATAACATAAACATttcaagtatttttatttttttaaatgaagctttattaaagatttgttttcataatttattctgaaaacaataaaaatgcgtatattatttaaaaaa
>TCONS_00004354
ctcttactCCTTCTGTGTCATTCATACCCACAGCACAACTTACACCACACAGACAATATCTAGAAGAACTTTCTCTCTTTGCTTATTCATGTTAAGCTATTAAGTTATTCATTTCATTGAAAACTCTTTCATGGACCCAAGGGCTTCTTCTACTCTTTGGATTTTTTGCCTGTCTTTCTGAAGCAGTCAAGAGCAACAGGGTCTGATTACGTTCCTGAGAGAGACTCTTTGAAGAATCTCATCTTCTCAGCAGGTTTATTTTCCCTCTTTTGACCCCGCGCCTCTGTTTTTACTTCACCACATTGTTGTGAGGGAGAATGTTAAGGATCTACTGTGGCGCTTGTGTtgttttatggatttttttcatAGCGGAGTGTAAAATTCCAGAGGTTCGCGTGAGCTGCATCTTCTCTGAGGACTGTGTTCTTCCCTGCTCTTTCACATCTACTGGTGCAAATGCGAATGTTCAGTGGTACCAGCAGGAGGCGCTGGTCCTCAGTTTACCGCAAGCGGGACAGGGACCCAGCAATGGAAACATGCAGTTCATCAGCAACAGTGCCTCTGATGGCAACGCTTCGATCATGCTAAAAAAAGCAGATAAGACGAGTAAAGGACGATACAAATGTGTGGTCAACAATGTGACTCAGACGTATGTTATTGCCATGGTGGAAGCTCCCATCAGGATGATCTCCATCAACAGCAGTGAGTCGGGTTTGGTCCAGTGCTCCACCAGAGATGTGTATCCTGCGCCGGTGTTGCAGTGGAGCTCAGAGCCCGCCTCAGCTCCTGGTGTCCTGCAGCCTATCACCCGCATCAGTCCTGGAG

Function

symbol description
hhla2a.1 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human HHLA2 (HERV-H LTR-associating 2).

GO:

id name namespace
GO:0042102 positive regulation of T cell proliferation biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0006955 immune response biological_process
GO:0031295 T cell costimulation biological_process
GO:0071222 cellular response to lipopolysaccharide biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-45 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human HHLA2 (HERV-H LTR-associating 2).

Ensembl:

ensembl_id ENSDARG00000043182

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004353 False 1468 mRNA 0.46 7 35417099 35437624
TCONS_00004354 True 825 mRNA 0.47 3 35422802 35429960

Neighbor

gene id symbol gene type direction distance location
XLOC_002277 NA coding upstream 2822 35369592 ~ 35414277 (+)
XLOC_002276 si:dkey-259j3.5 coding upstream 55733 35347993 ~ 35361366 (+)
XLOC_002275 si:dkey-259j3.5 coding upstream 78504 35329751 ~ 35338595 (+)
XLOC_002274 pora coding upstream 104214 35275965 ~ 35312885 (+)
XLOC_002273 tmem120a coding upstream 141749 35265083 ~ 35275350 (+)
XLOC_002279 hhla2a.2 coding downstream 2328 35439952 ~ 35452191 (+)
XLOC_002280 phldb2a coding downstream 31354 35468978 ~ 35528389 (+)
XLOC_002281 zdhhc20a coding downstream 116595 35554219 ~ 35580086 (+)
XLOC_002282 BX663516.1 coding downstream 207095 35644719 ~ 35644798 (+)
XLOC_002283 dre-mir-132-2 coding downstream 207393 35645017 ~ 35645135 (+)
XLOC_002271 NA non-coding upstream 175071 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 358538 35054311 ~ 35058561 (+)
XLOC_002266 CT573139.1 non-coding upstream 465234 34937548 ~ 34951865 (+)
XLOC_002263 NA non-coding upstream 1177261 34239060 ~ 34239838 (+)
XLOC_002289 BX088524.3 non-coding downstream 721343 36158967 ~ 36160287 (+)
XLOC_002294 NA non-coding downstream 763560 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding downstream 850217 36287841 ~ 36288503 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G428729 NA non-coding CI01000304 null 16951201 ~ 16955072 (-)