XLOC_002280 (phldb2a)


Basic Information

Item Value
gene id XLOC_002280
gene name phldb2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35468978 ~ 35528389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004356
AATTATCAGTAATTGGCTGTGAACATGCAGAGTCACCACAATGTGTCACGGCAGATGATCCTGAGATCCAGCCACACCACGGTGTCTTCATCTCCAACACTGCTGGAGTTATTACTTTACACCCCAATGGAAACATCTGCAGTCTGGATGGAGCTTCAGTCACCGGTCCAACAAAGCTTACTCATGGGTGCACTGTTTGTCTGGGTGAATCTTTTTTTCACTTCAACCACCCAGAAGAGTTGAATCGCATGAGGAACATGCTGCCAGAAAAGACTGCAGGTCCTGCGCTGTCCCTCAATACGGatACAACAAAGTTCCATTCCAATGGCGGCTCATTGGTTGGATCCAGCCTCCGCGGCACACGGTCCAAGGCAGAGCTTCAGGAGTTGATGGAGAGCCTGCAGCGGAGGAAATCTGCTCTGGAGGCCAGCTTAAAGGCTACTGCTGACCGTGGGTACCTCACATTATCTCCACCTCCCAGCCCACAGTCGGCTTCTTCCTATCTACAGGACCGTCCACCACTTTCAATACGAGTCCCTTCCCCTTACTCACCCTCCAGTAGTTTGAGCATGCCGCCATCTCCCCACCAATCAGAGCGCCCTATAAGTCCAGTCCCAAACCAAACCCGTGCCAGACACCAATCGCAGGACAGCCTGTTGCTTTGCCACTCTTCAGAAGGGCGGCATCCCAACTCTTCAAACCCACTCTTAACTATGTGGAATGGCTCTTCATCCTCCTACGGGAACGATGCTCTTCTTTCATCTCGCAGAGGTCCAAGCGGGGCGGCCAGCATGCCCTCCAGCCCTCGTTTGGGGCGCCGTTTGTTAGCACGAGATGGCGAGTCCCCCATTGAACCATCACTTCGCCAAAGAAAATACTCCACCGGCTCTTTGAATGGCCTGGGCGGACATAGTCGCTCTCTGCCCCGGTTGTATCGAGGAGACGCCCCAATGCTGTCTTTGCCACCCCGACGTACCACCAAACCACGGCGCAGCTTTCCATCCATGGAGAAGCCTCCAGATGTGACTGTGATTGCCAATGTGAACAGCAGCTCACGGAGGGCCAGCCTCTGCTCTGTGGGATCTGCCCCATGCTTGGATCTGGGCGTTGGAGAAAGGCGACTGTCGTTTGGGAAAGGAGGCCTGGGGCCCGGCATGGGGCCGAGGAGGGGCAGCATCAGCTCTCTCAGTGGAAAAGAGGAGCTCAGAGATTACCATCAGAGACAAAGAGATGAGCGACTACGAGAACAGGAAGTGGAGCGACTGGAGCGTCAGCGTCTGGAGACCATCCTGTGCCTGTGCTCTGAGCTGGGACGCACTGAAGTGAGTCGCATGGAGAGCGAGCCGAACACCTCTGCTGTTTCAGACCTGCAGAAGATCAACCGAGAGCTGGAGAAGCTTCAGGTGTCGGACGATGAGTCGGTGTTCTCTGAGTCTGCCTCTGTGTCTGTGGACGGAGGAGTGTTTCTGGGTAAAAGTCGAGGAGAGATACTGAACCAGAGACAGCGCAGAGTCAGCGGACACAGAGAGAGCAGGCCTCAGTCTCCCAGCAGCAGTATGAGGAGCACAGCACCCTCCCCATCACCACACCTCCGCTGCAAGGTGTCAGAAGACATGCAGCTGAGGCAGGAAGTGACACGGATAGAAGAGGAGAGGATTCAGGTGCTCAACAACATTGAGGAACTTGAACAGAAGATCAGAGATCTGGACACCCAGATGGACGAGTCAAtcagagaggtgtgtgtgtgtgtttgtgtgtgtgtgcacgagaAGCTTTGTGTGTTGTTAACTGAGCTGTCATGTTTAGTAGACATGGAAGTGGAGAGAGCACTTTTAGATGGCGAGCAGGAGGCAGAAGTGACTCAACTACAGAGTGATAAAGAAATGCTGGAGCAGCTCAACGAAAAAATGGGCAACATGGAGAAGAACTCTCAAAGGAATCAAACTCAGGACAAAGCCCTGTTGGAGGCTGAGAGAGATAAAGTAGAGAGGCTAGCTGAGCTGATCTCAGAACAGAAGACCCAGCTGGACTCCTGTCCTGAAGCACTGAAGGAGCAGCTCCAGAATCAGCTGTCCAGGGACACTGAAGCTTTGGAAGCGGAGAAGAAGCGCTTTGAAGATATGGAGTTTCAGCAGCTGGAGAAGGAGAGCTGTCAAGATGAAGAGACGGAGTCGCAGATGCAGCAGCTCCTCAGAGAGATCGCAGAATACCAGAGATCAGTCGTCTCTCGCAAGGAGAGGCTACTTACCCTGAAGAAGCAGTCGACTCAgattacccagcaggcacagcgGGAGAAGGAGAACTTCTTGAAGGAGAAGAGCAACCTCATTTATATGCTGCAAAGAGAACGAGAGAACCTTTCGTCTCTGGAAAGGAAGTACGCTGAGCTGACAGGTGGACAGGCGTTTCCTCTTAACCCTGTGTCCATGAAGGAGCACTTTCGCACACTGGAGGAGAGGAGACGGAGCAACGGCATTAAAGAGGGCGGAGTTCTGCTGAGTGACAACGGAACGCCCCGTAAAAGAGAAAGGCAGAGCTCTGGAACTCTAAACTCTGCCCTTAATCGCAGTCTGTCTCCCAAGCCTCATATGCCACTGTCTCAGAGCTCTAGCTGTGGCAGCGTCCTTCCCCGCACACTGTCAGTTAACTCTCGAGACCTGGACACCCGACGCCTGCTTAAGGCTGCAGGTCAGCTGTATCTCAATGACGAGAGGCAGAGGATGAGCGAAATGTCCAACAGGGCCGTTTCTGAGACAAATGTCTTCCTGGAGCCGTTTCACTACCTGGATAATGGACACAACTTTGACACAATGAGTGTGGACAGTACAGAGAGCCTGGAGACCAGCATTTCCGCATGTTCACCAGACAACATCTCCAGCGCCAGCACAGCTAATATGGCAAAGATAGAGGAGATGGAGCGCATGCTGAGAGAAGCTCAAGCTGAGAAGCACAGGCTGCTGGAGCACAGGGAGCGAGACATGGAGCTGCGCAGACAGGCTCTGGAGGACGAGAGGAGAAGAAGAGAAGAGCTGGAGAGAAGACTGCAGGAGGAGACCAGCAGAAGACAGAAACTAGTGGAGAGAGAGACATACAGTCTTATTCGTAAGCGAGAGTTGATTAGATctgtgctgtttgtgtgtgtccagTCTCGTCCGCTGACTCGGTATCTGCCGGTAAGGAAGGATGAATTCGACCTGCGAGGACACATCGAGGCGGCCGGACACCATCCAGAGACCTGCTTTCATCTGGCCATCACTGAGAAGACCTGCAGGGGCTTCCTGGTCAAGATGGGAGGCAAAATCAAAACCTGGAAGAAGCGCTGGTTCGTCTTTGACCGTAATCGTCGGACACTGGCATATTATGCTGatAAACACGAGACCAAAATGAAGGGTGTTATTTATTTCCAAGCCATTGAAGAAGTGTATTACGACCACTTGAAGAACGCACACAAGAGCCCGAACCCCTCTCTGACGTTCAGTGTGAAGACACATGACCGTGTTTATTACATGGTGGCTCCTTCCCCAGAGGCCATGAGGATCTGGATGGACGTTATCGTCACTGGAGCCGAGGGATATACACACTTCCTACTGTGA
>TCONS_00004357
aatagttgGGATATGAATAATAAAGGGGAataaagaggaagtgatgcagtggacgatgaaaaacaaacagacaaaaatccttAGTTGCCGACAGCTGTTACGAGCCAACCCAGCGGCAGCAAGGAGGTCAGGTGCTTTGGAGTGTGTTGTGAGCACTACCGAACGCAGAGGGGTGCAGAAGGAGCGCATGCTGTAGTATTTTTTCCCGGTGAAACGAATGCTTGCAGAATTGGGAAATCCCACACTCAGAGAATCCAACAAATTTAGTTCTGATCACAGATTTAGGAGAAATGTTTCTACTTTCTACTTAATGTTTCAACTACGAAACGCTGTCTGAAGTGGCGCTAGTAATTCCGGTCTTGGGTCacgatacatatatatatacacgatatatacacacacacacacacatatatatatacagtatacacacacacacacacacacacacacacacacacacacataaatatatacagtatacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacagtatacacacacacacatatatatatatatatatataaatatatacatatatatatatatatatatatatatatatgtatatgtatatatatatatatgtatatatatgtatgtgtgtgtgtgtgtgtgtatacacatagTAGGctcttttctttattaaaactttaacaattttttttttgttcaaacttGCCTATATAGTAATGTGTCTTGGTAaaaacacatatacagttgaagtcagaattataagcccccctttgaattttttttaattgaatatatatattttttccagatACAACAAAGTTCCATTCCAATGGCGGCTCATTGGTTGGATCCAGCCTCCGCGGCACACGGTCCAAGGCAGAGCTTCAGGAGTTGATGGAGAGCCTGCAGCGGAGGAAATCTGCTCTGGAGGCCAGCTTAAAGGCTACTGCTGACCGTGGGTACCTCACATTATCTCCACCTCCCAGCCCACAGTCGGCTTCTTCCTATCTACAGGACCGTCCACCACTTTCAATACGAGTCCCTTCCCCTTACTCACCCTCCAGTAGTTTGAGCATGCCGCCATCTCCCCACCAATCAGAGCGCCCTATAAGTCCAGTCCCAAACCAAACCCGTGCCAGACACCAATCGCAGGACAGCCTGTTGCTTTGCCACTCTTCAGAAGGGCGGCATCCCAACTCTTCAAACCCACTCTTAACTATGTGGAATGGCTCTTCATCCTCCTACGGGAACGATGCTCTTCTTTCATCTCGCAGAGGTCCAAGCGGGGCGGCCAGCATGCCCTCCAGCCCTCGTTTGGGGCGCCGTTTGTTAGCACGAGATGGCGAGTCCCCCATTGAACCATCACTTCGCCAAAGAAAATACTCCACCGGCTCTTTGAATGGCCTGGGCGGACATAGTCGCTCTCTGCCCCGGTTGTATCGAGGAGACGCCCCAATGCTGTCTTTGCCACCCCGACGTACCACCAAACCACGGCGCAGCTTTCCATCCATGGAGAAGCCTCCAGATGTGACTGTGATTGCCAATGTGAACAGCAGCTCACGGAGGGCCAGCCTCTGCTCTGTGGGATCTGCCCCATGCTTGGATCTGGGCGTTGGAGAAAGGCGACTGTCGTTTGGGAAAGGAGGCCTGGGGCCCGGCATGGGGCCGAGGAGGGGCAGCATCAGCTCTCTCAGTGGAAAAGAGGAGCTCAGAGATTACCATCAGAGACAAAGAGATGAGCGACTACGAGAACAGGAAGTGGAGCGACTGGAGCGTCAGCGTCTGGAGACCATCCTGTGCCTGTGCTCTGAGCTGGGACGCACTGAAGTGAGTCGCATGGAGAGCGAGCCGAACACCTCTGCTGTTTCAGACCTGCAGAAGATCAACCGAGAGCTGGAGAAGCTTCAGGTGTCGGACGATGAGTCGGTGTTCTCTGAGTCTGCCTCTGTGTCTGTGGACGGAGGAGTGTTTCTGGGTAAAAGTCGAGGAGAGATACTGAACCAGAGACAGCGCAGAGTCAGCGGACACAGAGAGAGCAGGCCTCAGTCTCCCAGCAGCAGTATGAGGAGCACAGCACCCTCCCCATCACCACACCTCCGCTGCAAGGTCAGACACGATATATACTGGTATAAACAGGGTTCCCacgcttcttgaaagtacttaaaAGTGCTTGAATTTCAGACATGTGGATTTAAGACCTGGATGGTGCTTAAAATCAAACACAGGTCCTTGAAAGTGtttgaattaaatttgaaataaaatatgttttttttttcaagaattgTTCACAATtgtcaaaaacagaacaaaaaaattataaattctttaattaaaatttaaatcttgTACATCATCACTGACAaataaagcatatttttaaaaaaatattttagaaactgcttttaAATATTAACAGTATTTAATTCAACAAATTTGATTTAAGTTCTTTGAACATGACTGCATAAAAtggtaaattttttaaaaattacttatattttttacataaatatta
>TCONS_00004358
GAAAAAAGTCATCtatctgtttttctgtctAGCCCGAACCCCTCTCTGACGTTCAGTGTGAAGACACATGACCGTGTTTATTACATGGTGGCTCCTTCCCCAGAGGCCATGAGGATCTGGATGGACGTTATCGTCACTGGAGCCGAGGGATATACACACTTCCTACTGTGA

Function

symbol description
phldb2a Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB2 (pleckstrin homology like domain family B member 2).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0045180 basal cortex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-9 Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB2 (pleckstrin homology like domain family B member 2).

Ensembl:

ensembl_id ENSDARG00000079889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004356 False 3593 mRNA 0.53 18 35468978 35528389
TCONS_00004357 False 2572 mRNA 0.43 2 35491216 35500703
TCONS_00004358 True 171 mRNA 0.49 2 35526528 35528389

Neighbor

gene id symbol gene type direction distance location
XLOC_002279 hhla2a.2 coding upstream 16787 35439952 ~ 35452191 (+)
XLOC_002278 hhla2a.1 coding upstream 31354 35417099 ~ 35437624 (+)
XLOC_002277 NA coding upstream 54701 35369592 ~ 35414277 (+)
XLOC_002276 si:dkey-259j3.5 coding upstream 107612 35347993 ~ 35361366 (+)
XLOC_002275 si:dkey-259j3.5 coding upstream 130383 35329751 ~ 35338595 (+)
XLOC_002281 zdhhc20a coding downstream 25830 35554219 ~ 35580086 (+)
XLOC_002282 BX663516.1 coding downstream 116330 35644719 ~ 35644798 (+)
XLOC_002283 dre-mir-132-2 coding downstream 116628 35645017 ~ 35645135 (+)
XLOC_002284 rtn4rl1a coding downstream 424143 35952532 ~ 35959571 (+)
XLOC_002285 hmgb1a coding downstream 498187 36026576 ~ 36032038 (+)
XLOC_002271 NA non-coding upstream 226950 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 410417 35054311 ~ 35058561 (+)
XLOC_002266 CT573139.1 non-coding upstream 517113 34937548 ~ 34951865 (+)
XLOC_002263 NA non-coding upstream 1229140 34239060 ~ 34239838 (+)
XLOC_002289 BX088524.3 non-coding downstream 630578 36158967 ~ 36160287 (+)
XLOC_002294 NA non-coding downstream 672795 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding downstream 759452 36287841 ~ 36288503 (+)

Expression


Co-expression Network