XLOC_002284 (rtn4rl1a)


Basic Information

Item Value
gene id XLOC_002284
gene name rtn4rl1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35952532 ~ 35959571 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004362
gtgttaagaaaatcttctcttcGCTGTGGTCTGGAGTTTCTCCTGGTGTTGTGTGGTTTAGAGTTGACCCAGGCCTGTCCGCGTCACTGCATCTGCTACGACTCTCCCAGCACCGTCAGCTGCCAGGCTCACAACTTTCAGGTGGTTCCTGAGGGAATTCCGGCCCAGAGCGAGCGCGTCTTTCTGCAGAACAACAAGATCCAGCGGCTGCTGCAGGGCCACTTCAGCCCGACCACAGTCATGCTCTGGCTCTACTCCAACAACATCTCTTACATCCAGCCCTCCACCTTCATGGGCTTCACCCGCCTGGAGGAGCTGGATCTGGGGGACAACAAACACCTGCGCTCTCTGGCTTCAGACACTTTCCAGGGCCTGACGAGACTGCATGCTCTGCACCTCTACCACTGTGGCCTGATCACTCTACCCGCTGGCTTGTTTGAGGGCTTGCACAACCTGCAGTACCTCTACTTACAGAGCAACCAGCTGGAGTTTCTCGAGGATGACATGTTCATTGATCTACTGAATCTGAGCCATCTATTTCTTCATGGAAATCGGCTGTGGAGCCTCCACCAGAACACTTTCCGTGGCCTGGGAGCACTGGATCGCTTGCTTCTCCATCAAAACCGGCTCCAGTGGGTCCATAAGCAGGCTTTCCATGACCTGCGGCGCCTGACCACCCTCTACCTGTTCAACAACTCACTGCCGGAGCTGCCGGCGGAGAGTCTATCGCAACTGCCTGCGCTCGAGTACCTGCGCCTCAACGACAACCCATGGGAGTGCGACTGCAAGGCTGTGCCGCTCTGGGATTGGCTGCGGCGCTTCCGTGGCTCCACCTCCGCATTAATATGCACAGCTCCACCTGAGCTGGTGGGGAAGGATCTGAAACAGCTGACAAAAGAACAGCTGCCATCCTGTACGGGATCCGAGTCGCTCCACCAGAGCAAATCCAGCAATCAGGGGGATGTGGGGGTTTCGCTGAAGAAAGATCATCACCATCGATCAAACTGCACGAGGCATCGTGGTCGCAAGGGTAACGGTCAAAACGAGGTGTATAACCTAAAGGACTTGGGCAACAAGGAATCAGATGATAAATACGACCCCACAAAACCAAGACGAAAGAACAAGTGCATCCCACGGACTTCAGTAGGGCCCCCTAGTGGCGTGCAGAGGGCGAACAGCAGGGCCACTTCCCTCTTGGCTCCTGGTTTCATCATCCCTCTTTGCTTATTGGTGTGTCTCACTGCCCTGATTTTCCGCTGA
>TCONS_00004363
GGCTGTGGTCTGGAGTTTCTCCTGGTGTTGTGTGGTTTAGAGTTGACCCAGGCCTGTCCGCGTCACTGCATCTGCTACGACTCTCCCAGCACCGTCAGCTGCCAGGCTCACAACTTTCAGGTGGTTCCTGAGGGAATTCCGGCCCAGAGCGAGCGCGTCTTTCTGCAGAACAACAAGATCCAGCGGCTGCTGCAGGGCCACTTCAGCCCGACCACAGTCATGCTCTGGCTCTACTCCAACAACATCTCTTACATCCAGCCCTCCACCTTCATGGGCTTCACCCGCCTGGAGGAGCTGGATCTGGGGGACAACAAACACCTGCGCTCTCTGGCTTCAGACACTTTCCAGGGCCTGACGAGACTGCATGCTCTGCACCTCTACCACTGTGGCCTGATCACTCTACCCGCTGGCTTGTTTGAGGGCTTGCACAACCTGCAGTACCTCTACTTACAGAGCAACCAGCTGGAGTTTCTCGAGGATGACATGTTCATTGATCTACTGAATCTGAGCCATCTATTTCTTCATGGAAATCGGCTGTGGAGCCTCCACCAGAACACTTTCCGTGGCCTGGGAGCACTGGATCGCTTGCTTCTCCATCAAAACCGGCTCCAGTGGGTCCATAAGCAGGCTTTCCATGACCTGCGGCGCCTGACCACCCTCTACCTGTTCAACAACTCACTGCCGGAGCTGCCGGCGGAGAGTCTATCGCAACTGCCTGCGCTCGAGTACCTGCGCCTCAACGACAACCCATGGGAGTGCGACTGCAAGGCTGTGCCGCTCTGGGATTGGCTGCGGCGCTTCCGTGGCTCCACCTCCGCATTAATATGCACAGCTCCACCTGAGCTGGTGGGGAAGGATCTGAAACAGCTGACAAAAGAACAGCTGCCATCCTGTACGGGATCCGAGTCGCTCCACCAGAGCAAATCCAGCAATCAGGGGGATGTGGGGGTTTCGCTGAAGAAAGATCATCACCATCGATCGCACAACcgccatcatcatcatcctcatctgccACATCAGGATCAATACTACCCAACATCCCCATCACCGATCCCTCGACCGCC

Function

symbol description
rtn4rl1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000007856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004362 False 1260 mRNA 0.55 4 35952532 35959571
TCONS_00004363 True 1064 mRNA 0.57 2 35953068 35959294

Neighbor

gene id symbol gene type direction distance location
XLOC_002283 dre-mir-132-2 coding upstream 307397 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 coding upstream 307734 35644719 ~ 35644798 (+)
XLOC_002281 zdhhc20a coding upstream 372446 35554219 ~ 35580086 (+)
XLOC_002280 phldb2a coding upstream 424143 35468978 ~ 35528389 (+)
XLOC_002279 hhla2a.2 coding upstream 500341 35439952 ~ 35452191 (+)
XLOC_002285 hmgb1a coding downstream 67005 36026576 ~ 36032038 (+)
XLOC_002286 katnal1 coding downstream 78406 36037977 ~ 36063414 (+)
XLOC_002287 smyd4 coding downstream 132993 36092564 ~ 36106146 (+)
XLOC_002288 waif2 coding downstream 191340 36150911 ~ 36156658 (+)
XLOC_002289 BX088524.3 coding downstream 199396 36158967 ~ 36160287 (+)
XLOC_002277 NA non-coding upstream 538255 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 710504 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 893971 35054311 ~ 35058561 (+)
XLOC_002294 NA non-coding downstream 241613 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding downstream 328270 36287841 ~ 36288503 (+)
XLOC_002315 CU694807.1 non-coding downstream 766667 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 845465 36805036 ~ 37064390 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17210568_17214463 NA coding CI01000304 null 17210568 ~ 17214638 (+)