XLOC_002277


Basic Information

Item Value
gene id XLOC_002277
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35369592 ~ 35414277 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005921
attgtgttttaaatacttttattataGCAGGATTTTGAGCAGAAACCATTTTTATCAATGAAAATGTCaatgtaaatatatcaatatTATGAATTGCTGGTATTGTTGGTGGTGTTGCTGTATTTTGCAAGAAACTTTATGGCAATAACAAAGTTTTTGCTTGTCCAGTAAACTTGTGTTTACTTAAGATGACCACATGAGGGCGACGTTTAACCTAAAATGATATTCAGTCATTCCAGGCCAGCGTGAGTAAATATAACTGATCTCTGACGTGCGCGTGACCCTGACCTTTCCTTTCTGGAGTTTCTTCATCTCCTCCACTGTGGTGAAGTAATTCACTGCAGCGTATTCAATGACCGACAGGAACACGAAGAGGAAACTGGCCCACAGGTAGATGTCGACCGCTTTCACATAGGACACCTGCGGCATGGAGGCCGACACGCCCGTGATGATGGTGGACATGGTCAACACGGTGGTGATTCCTGGAAGAAATGAAGAGGTTTCAGACTGAAACACATGATGACGCGAAAGAAAGTCAGTCATGggggtttgaaacaacatgaggAAAAGAGGCTTGATGCGGTACCTGACGCTGTAAAGAATGTTCCCGTCTGGAAAGACTCTGAGCATGATGTTTTCCATGGTCGTGTCATGAATGAAGGAACGCTTGGAGTGAACAAAGAAGACGTCTGGCACCCAGATCTTTTTCACCAGCCGCGCGTCAAATGTTCGGCTCTTGTTATTGCTGGAGGGGAAGGCCAGCCTGTCGTCCTGCCAGTAATGCCTGAGGTACAGTGTCATGGTGAAGTCCTATGCCCACAAAAGACATGAGAGCGCATCTGTGGTGAATCCAATCTGTTTAAATGACTGAGGATTTAAGCTTGATGTGTGACGAGCGTGAAGAAGGCTCGCAGGCGTGAAGGCGTGCAGAGCTCAACGACAGGTTAAAGGTTAGAAGTAATTTATAAAAGAGCAGACACTCACCATATTGACCTCTGAAATGCCGTCAATGCTCTCCACTTGCACATCGATGCCCACTGGAATAGCCGAACCTGACCAGTGTCACAAACAGAAGAAATGTGGGCAGAAATGAGGAAGATCATGCTTAAAATGAAAAACACTAACCGAACTGTTGACTTTTATGGTGGTTGATCTTCTTTTTGATGCAATAACAGGCAGCATGACCAGAGAATGTGATTCACATCATGAGTTGATAAGTG
>TCONS_00005922
CAGTCATTCCAGGCCAGCGTGAGTAAATATAACTGATCTCTGACGTGCGCGTGACCCTGACCTTTCCTTTCTGGAGTTTCTTCATCTCCTCCACTGTGGTGAAGTAATTCACTGCAGCGTATTCAATGACCGACAGGAACACGAAGAGGAAACTGGCCCACAGGTAGATGTCGACCGCTTTCACATAGGACACCTGCGGCATGGAGGCCGACACGCCCGTGATGATGGTGGACATGGTCAACACGGTGGTGATTCCTGGAAGAAATGAAGAGGTTTCAGACTGAAACACATGATGACGCGAAAGAAAGTCAGTCATGggggtttgaaacaacatgaggAAAAGAGGCTTGATGCGGTACCTGACGCTGTAAAGAATGTTCCCGTCTGGAAAGACTCTGAGCATGATGTTTTCCATGGTCGTGTCATGAATGAAGGAACGCTTGGAGTGAACAAAGAAGACGTCTGGCACCCAGATCTTTTTCACCAGCCGCGCGTCAAATGTTCGGCTCTTGTTATTGCTGGAGGGGAAGGCCAGCCTGTCGTCCTGCCAGTAATGCCTGAGGTACAGTGTCATGGTGAAGTCCTATGCCCACAAAAGACATGAGAGCGCATCTGACGTCCTTGTGCCTCCTCTGGTTTTGCGTGTTGCTTCCTTTTAGCCATGCGACGGGCCACAGCCAGGCCAGGCACATCAGCCTCAGTGCCGCAAGAGCCAAGTTCATGACCAAGGCCTGTGCGAGAAACCAAGAGACGCAGCGGGATCAGTCGAACTCTTTGGCTTTCTTTACCAAGCATCCTTTCCGTCTCCAGGTGTCGCCCATTCCGACACGACCCTTAGATCCAGCAGAAGTTACATGGTGCCGCTCCAAATCTGCATTGGTTCACGTAAAGCTGTTGGTTTGTGTTTCCCTCCCTGCCTAACACTCCGGCATGGTGCTCTCCCTTCATCCCCCCTCCCTCGATTAAAGCCAAATATCAATTTAGTTCTATAATGACAAAGAAATGACGTTAATTCCTCCCTAATCTTCTTACATGCAGCTGCTGAAATCTTTCAGTAACCTATAAACTCCATGGGGAAGGGGAGGTGCGTCACAAGCAGAGCCAACTTTACTATCACgctggttaaaaaaaacaaccatagagaataataaaaataccacCGAAGAGAATAGTCATCACATTGCAGACTGAAGGAATCTAGAAATATATGACTGATCTTATATGCACATCAGCACAAAACGTATATTGTGCTTTTTTTACTATTGACTTTAATGCTGCAATgtgaaaatgctgggttccacacaattccttcatgttgtctcaacacaaaccaATTAATCTAACTTAATTGTAAATGgatcaaaacataaataaaataagggctctatcataccactggcacaataaggcgcaagatgtctTTTGTGTGAtttgtaagggtgtcacgatcctcca
>TCONS_00005923
CAGTCATTCCAGGCCAGCGTGAGTAAATATAACTGATCTCTGACGTGCGCGTGACCCTGACCTTTCCTTTCTGGAGTTTCTTCATCTCCTCCACTGTGGTGAAGTAATTCACTGCAGCGTATTCAATGACCGACAGGAACACGAAGAGGAAACTGGCCCACAGGTAGATGTCGACCGCTTTCACATAGGACACCTGCGGCATGGAGGCCGACACGCCCGTGATGATGGTGGACATGGTCAACACGGTGGTGATTCCTGGAAGAAATGAAGAGGTTTCAGACTGAAACACATGATGACGCGAAAGAAAGTCAGTCATGggggtttgaaacaacatgaggAAAAGAGGCTTGATGCGGTACCTGACGCTGTAAAGAATGTTCCCGTCTGGAAAGACTCTGAGCATGATGTTTTCCATGGTCGTGTCATGAATGAAGGAACGCTTGGAGTGAACAAAGAAGACGTCTGGCACCCAGATCTTTTTCACCAGCCGCGCGTCAAATGTTCGGCTCTTGTTATTGCTGGAGGGGAAGGCCAGCCTGTCGTCCTGCCAGTAATGCCTGAGGTACAGTGTCATGGTGAAGTCCTATGCCCACAAAAGACATGAGAGCGCATCTGGATTAGAGTGTGATTGAGGGCACAGAGGAGGGATGGCATCTGAGGGAGACGGGCACGTGCTGCAGCCAGTCTGGAGAAAGCTGCTCTTTTACACTCAACCAGGATCATCCTGCCCTATTGAGATCATTCATCATTACAAGAAGGATATAAAAGCTGCCCCACAATCACAGCGAATGGGTAATTTCCACAATCGCGGTCCCTCGTTTTAGATCAAACAACACAAGTCCAGTAAACATCCTCTTGTGGCCAGATACTGTATGGCAGGAGAGCCATCGATATTTCTTCGATCCTAATATGTAGTTTATCATATAGCCGTAAGTGTATTCTGATTAAAagcttaaatatgttttaaagctCTTTATATTATCTTGAGCTGCAATCAAAGTGTACACATACCTTTAAAAATGGC

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0035803 egg coat formation biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0009988 cell-cell recognition biological_process
GO:0033036 macromolecule localization biological_process
GO:0033596 TSC1-TSC2 complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005921 False 1220 lncRNA 0.44 4 35369592 35389697
TCONS_00005922 False 1455 lncRNA 0.47 4 35369819 35411219
TCONS_00005923 True 1024 lncRNA 0.47 4 35369819 35414277

Neighbor

gene id symbol gene type direction distance location
XLOC_002276 si:dkey-259j3.5 coding upstream 8226 35347993 ~ 35361366 (+)
XLOC_002275 si:dkey-259j3.5 coding upstream 30997 35329751 ~ 35338595 (+)
XLOC_002274 pora coding upstream 56707 35275965 ~ 35312885 (+)
XLOC_002273 tmem120a coding upstream 94242 35265083 ~ 35275350 (+)
XLOC_002272 styxl1 coding upstream 107224 35257651 ~ 35262368 (+)
XLOC_002278 hhla2a.1 coding downstream 2822 35417099 ~ 35437624 (+)
XLOC_002279 hhla2a.2 coding downstream 25675 35439952 ~ 35452191 (+)
XLOC_002280 phldb2a coding downstream 54701 35468978 ~ 35528389 (+)
XLOC_002281 zdhhc20a coding downstream 139942 35554219 ~ 35580086 (+)
XLOC_002282 BX663516.1 coding downstream 230442 35644719 ~ 35644798 (+)
XLOC_002271 NA non-coding upstream 127564 35236348 ~ 35242028 (+)
XLOC_002269 NA non-coding upstream 311031 35054311 ~ 35058561 (+)
XLOC_002266 CT573139.1 non-coding upstream 417727 34937548 ~ 34951865 (+)
XLOC_002263 NA non-coding upstream 1129754 34239060 ~ 34239838 (+)
XLOC_002261 NA non-coding upstream 1176286 34190542 ~ 34193306 (+)
XLOC_002283 dre-mir-132-2 non-coding downstream 230740 35645017 ~ 35645135 (+)
XLOC_002289 BX088524.3 non-coding downstream 744690 36158967 ~ 36160287 (+)
XLOC_002294 NA non-coding downstream 786907 36201184 ~ 36381043 (+)
XLOC_002299 BX088524.1 non-coding downstream 873564 36287841 ~ 36288503 (+)
XLOC_002260 BX548044.3 non-coding upstream 1149351 34175468 ~ 34220241 (+)

Expression


Co-expression Network