XLOC_002261


Basic Information

Item Value
gene id XLOC_002261
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34190542 ~ 34193306 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005917
gttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcattcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacttttattttccatgcctttaaaggaaaaaagtcagaaattttgcccgtctgagcacattttattcattgtaaaacacaaaactaaacaaaaaacagcttaatttaccacacacacacacacacatatatacaggtGTAAATTATAAGGTGTTCACTGTtcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTTAAATCACTTTACCcatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttgtgtttgtttgattaaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTTTCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGAGGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATGTATATGAAATGTCTACATTGTTTAGGCATATATGATTGTAtgagataaaatgcatttattctttcaCTACTATGGTAATAACAGAAAGAGACGCAttagttttactattactattgtttatgacaaacattaaaaaactacacaataagctcacaaaatattgtggcctaactgtttaaaactatttgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGACCATCAACTGTCCACATTGGGGTTTAAGAAATTAGAACTGCTTATGCTGCTTGTCTACTAGTCTTAGGATAAGttagaaatgttataaatgtaatttttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGCTTCCATTAGTCCCTGTATCTGTAGACCTAGATGACAGTGGACTAGAgtcaaattttgtttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaaatatttttatattctttccatTGGTGGAAAAGATGTTGGTATAATTATTAATGGACTGCTAAGatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGTCATTCATCTGTCCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATGTTAACCATAAGCATAACCATTTCAAGAATGCACAaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTCATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTATATCTGAGATAGATGAGCTATATGATTATCTTAAACTGATCTACAGGTAAATGCCAAAACTTATCGGTTtacttatttgcttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAGTATTTCTTCTATAGGATTGCAGTGAACAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATGTTCAACAATTTGGGCATCTCGCTGACCTGTTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGTTGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgatactattattgttattttttcagTAACAGAAGCAAagacaacaaacaacaaaagtGATATGGATGTCTTCGTCATATGGCATGGTATGTACACTAGACTTCTATCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAACTgtctttttataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaaca

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005917 True 2765 lncRNA 0.34 1 34190542 34193306

Neighbor

gene id symbol gene type direction distance location
XLOC_002259 BX548044.2 coding upstream 19117 34151286 ~ 34171425 (+)
XLOC_002258 BX548044.1 coding upstream 43297 34124421 ~ 34147245 (+)
XLOC_002257 BX548044.5 coding upstream 70241 34108541 ~ 34120301 (+)
XLOC_002256 zgc:174193 coding upstream 86051 34047352 ~ 34104491 (+)
XLOC_002255 BX548044.4 coding upstream 147223 34035689 ~ 34043319 (+)
XLOC_002262 BX510654.2 coding downstream 42862 34236168 ~ 34236424 (+)
XLOC_002263 NA coding downstream 45754 34239060 ~ 34239838 (+)
XLOC_002264 stard13a coding downstream 122413 34315719 ~ 34404768 (+)
XLOC_002265 nbeaa coding downstream 232950 34426256 ~ 34734995 (+)
XLOC_002266 CT573139.1 coding downstream 744242 34937548 ~ 34951865 (+)
XLOC_002252 NA non-coding upstream 319530 33870189 ~ 33871012 (+)
XLOC_002269 NA non-coding downstream 861005 35054311 ~ 35058561 (+)
XLOC_002271 NA non-coding downstream 1043042 35236348 ~ 35242028 (+)
XLOC_002277 NA non-coding downstream 1176286 35369592 ~ 35414277 (+)

Expression


Co-expression Network