XLOC_002264 (stard13a)


Basic Information

Item Value
gene id XLOC_002264
gene name stard13a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34315719 ~ 34404768 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004325
ATGTGTTACTTTGAGCCCCGCTCTCCCCTAGGTcccatttttttattacaCAAGTGCTTGGGAAGCATGACTCCAGAGACTCAAGATATATACCTCAGACTGGACAGCCACCACAGGCGGTCTGGGCTACGCCTGGCCCGAATTATTGCAAGACAGCAGCTGCTGAAGAAGATATCCCAAGAAATCGAGGCAAAGGAGGCATGTGACTGGCTGCGGGCGGCGGGATTCCCACAGTATGCCCAACTTTATGAGGATTCCCAGTTTCCCATTGAAATATCCGCTGTCAAGAGGGACCATGACTTTCTGGATAAAGACCTTGTGGAGCCTCTTTGCCGTCGACTCAACACTCTGAACAAGTGTGCCTCCATGAAACTGGACGTGAGCCTCCCTAAGAAGAAAAGTGAAGACTCTGATGAGGAGGACTTATTGGCCATCAGCAATAGATGGACGTTTGAGTGGAACAGCCGGCGTTGGTCCCGTCTGCAAGACATCGATTACCTCCTGGGTCGAGCAGAAGAGCGGAGCCCCTCGGAGGTGGGTGAGGGCCTGCGGACCACCGTGAGCAGCGAGAGCATCCTGACAGACCTCAGTGAGCCGGAGATCTGCTCCCTGCACAGCGAAGACTCTTTGGCTGCCATGCCAGACTCTGCCTCTCTCACCCCATTGCACTTGCCTAGAGAGCTGCCTCATTACGGCTCACTCCCTGCCAAAAGCAGGCGACGGGGACGTACACGCGCCAAAGATTTCCTTAGGAGGATGGAAACGCTGGGTCGGACATGGGGGCCATCGATGGGCCGTTCAGAACGACGCTCTTTAGTTATTAGCAGCCCAGTTTTGCAAAGCGAGCCAGAAGCTCTAAAGACTCTACGATGTGTTCAGATTTTCAACGGTGCACCCATTAATGCCGAAAACACACCACCTGCCGACAACCTGCCAAATTCACTGCCCAGCAGTGaggccagcagccaatcagagaccAGCGGCAGTGCTGGGAGCACACCGAACAACGCGGGACGTCTGTCAAAGTTGTATCCTCCTGGAAAACGTGCTGGCGTTTACCTTGAGGACATCGATGTTCTCGCTGGCGCCCCACAGAGAAGAAGGCCTGTTGAACAGAGCCGCAAAAATGAGTTTCGCTCCTATGATGAGCTATTAGTGCACATCCCAAAAGATCACAAACCTGGTACTTTTCCCAAAGCGCTGTCGATTGAGAGTCTGACTCTGGCCAATAAGGAACACGGAAACTGGAAGGTTCTGGATTCAGAGCCGCAGCCATTTAAATGCAGGAAAGTTGGCGGAAGAGAAGTTCGTCCCGTGACGCGCTGCTGTCCTAGGGGAAGCAGGATCAGCGTGTATGATAACGTGCCCGGCTCGCATCTGTATGCAAGCACAGGGGACTTGTTGGACCTCGAGAAGGAGGATATATTCCCACATTTGGATGATATACTGCAGCATGTCAATGGCCTGCAGCAGATCGTGGACCACTGGTCTAAAAATGTGCTACCTGAGAGCGAAGGGGAGGGGGATGGTGGCAGGGGGCAGGACAAGAGGATGATTGACGGCCAGTCCTCCAGTCAGATCACACTGGACTTTGAGGGGACCTCTGTTATTGAAGGCCTGACCACACCGAGTGACGGCAACAGGGACGGGGTTTCGTTAAATGACACAGACACCTCCAGCACTAGAGAGAGGAGGGACTCAGGCGTCGGAGCTTCTCTTACACGACCACGGCTTAGATGGCCGAGCTTCAGGATGTCAAACCTGCTCAGCCAATCCGGAATCTCGCTACAAATATCTAGCCAATCGGTGGGCCAGCTTAGCCTGCTGCAGAAGTTCTCTTTATTGCGCCTCACTGCGATCATGGAGAAATACTCCATGTCTAACAAACATGGATGGACTTGGTCAGTGCCAAAATTCATGAAGAGAATAAAGGGACCAGACTACAAGGATAAGACTGTTTTTGGCGTTCCTCTGATCGTACATGTCCAGCGGTATGGACATCCTCTGCCCATGTGCTTACAGCTCGCCCTGCGCTTTTTGAGAAGCCAGTGTTTAGACCAGGTGGGACTTTTCCGTAAATCTGGTGTAAAGTCTCGTATCCAGGCTCTCAGGCAAATGTGTGAAACCTCCCCTGAAAATGTGAACTATGATGATCAGTCTGCGTATGACGTGGCGGACATGGTCAAACAGTTCTTCAGAGACTTACCTGAGCCACTTCTCACAAGCAAAATGGGCGAAACCTTCCTTCATATATACCAGTATGTCCCTAAAGAGCAACGCTTACAAGCTGTGCAGGCAGCAATCATGCTGATGGCGGATGAAAACCGTGAGGTCCTGCAGACTCTGCTGTGCTTCctaaatgatgtcacttcctcagTTGAGGAGAACCAGATGACCCCGATGAACCTGGCCGTGTGCCTCGCTCCATCGCTTTTCCACCTCAACATCATGAAGAATGATAACCTGTCGCCCAGGTCTATTCAAAGGAAGTATGCCACTGGGCGGCCAGACCAAAAGGACCTGAATGAGAACCTTGCAGCCACTCAGGGTCTAGCGCACATGATTGCTGAGTGTAATCACCTGTTTGAGATTCCTCAGGAGATGGTGTCTCAGTCCAGGAACTCATACATGGAGGCTGAGCTGCTGGCGCCCTCTATAGACGAGCTGTGTAAAAAACAGCCTCAGCtggacgaggaggaggaggaagaagaagaagaggaaggcACGTGTCGCTCTTTTCTGGACAGCCTGATTCAGAATCTGATGAGGGAGAGCAAAGACAAGACCAAAGGCTGGGTGACCCGATCAAACATCGACAACGCTGAGCTCTCTTTTAAAAAGGTTGGAGACGGGACGCCGTTGAGGCGCTGGAGAGTGTCTGCCGAGGTGGAGGCTCCTCCGTCAGTGGTGCTGAACCGGATTCTGAGAGAGCGCCACCTGTGGGACACTGACCTGCTGCAGTGGAAGCTTCTGGAGACTCTGGACAAGCAGACTGAGGTTTATCAGTATGAGCTGAAGAGCATGGCTCCGCATCCCAGCAGAGACTTTGTGGTGCTTAGGACGTGGAGGACGGATCTGGcgaaaggtgtgtgtgtgctggtgtcgGTGTCCATCGAGCATGAGGAAAGCCCTCATCTGGCTGGAGTGAGAGCAGTGCTGATGGAGTCTCAGTATCTGCTGGAGCCCTGCGGATCGGGAAAATCCAGACTCACTCACATCTGCAGAGCTGACCTCAAAGGAAAGTCTCCAGAGTGGTACAACAAAACTTTCGGCCACGTCTGTGCAAGCGAAGCCATCCGCATCCGTAACTCTTTTCAGACTCTGGATCCTGAGGGCCCCGAGACCAAAATCTGA
>TCONS_00004326
ACTCAAACCTCTGAGGATATTTGCTTGGGAAGCATGACTCCAGAGACTCAAGATATATACCTCAGACTGGACAGCCACCACAGGCGGTCTGGGCTACGCCTGGCCCGAATTATTGCAAGACAGCAGCTGCTGAAGAAGATATCCCAAGAAATCGAGGCAAAGGAGGCATGTGACTGGCTGCGGGCGGCGGGATTCCCACAGTATGCCCAACTTTATGAGGATTCCCAGTTTCCCATTGAAATATCCGCTGTCAAGAGGGACCATGACTTTCTGGATAAAGACCTTGTGGAGCCTCTTTGCCGTCGACTCAACACTCTGAACAAGTGTGCCTCCATGAAACTGGACGTGAGCCTCCCTAAGAAGAAAGTAAGTGGCTTTTTAATTGAATTCTTGTAG
>TCONS_00004327
ATGCCAGACTCTGCCTCTCTCACCCCATTGCACTTGCCTAGAGAGCTGCCTCATTACGGCTCACTCCCTGCCAAAAGCAGGCGACGGGGACGTACACGCGCCAAAGATTTCCTTAGGAGGATGGAAACGCTGGGTCGGACATGGGGGCCATCGATGGGCCGTTCAGAACGACGCTCTTTAGTTATTAGCAGCCCAGTTTTGCAAAGCGAGCCAGAAGCTCTAAAGACTCTACGATGTGTTCAGATTTTCAACGGTGCACCCATTAATGCCGAAAACACACCACCTGCCGACAACCTGCCAAATTCACTGCCCAGCAGTGaggccagcagccaatcagagaccAGCGGCAGTGCTGGGAGCACACCGAACAACGCGGGACGTCTGTCAAAGTTGTATCCTCCTGGAAAACGTGCTGGCGTTTACCTTGAGGACATCGATGTTCTCGCTGGCGCCCCACAGAGAAGAAGGCCTGTTGAACAGAGCCGCAAAAATGAGTTTCGCTCCTATGATGAGCTATTAGTGCACATCCCAAAAGATCACAAACCTGGTACTTTTCCCAAAGCGCTGTCGATTGAGAGTCTGACTCTGGCCAATAAGGAACACGGAAACTGGAAGGTTCTGGATTCAGAGCCGCAGCCATTTAAATGCAGGAAAGTTGGCGGAAGAGAAGTTCGTCCCGTGACGCGCTGCTGTCCTAGGGGAAGCAGGATCAGCGTGTATGATAACGTGCCCGGCTCGCATCTGTATGCAAGCACAGGGGACTTGTTGGACCTCGAGAAGGAGGATATATTCCCACATTTGGATGATATACTGCAGCATGTCAATGGCCTGCAGCAGATCGTGGACCACTGGTCTAAAAATGTGCTACCTGAGAGCGAAGGGGAGGGGGATGGTGGCAGGGGGCAGGACAAGAGGATGATTGACGGCCAGTCCTCCAGTCAGATCACACTGGACTTTGAGGGGACCTCTGTTATTGAAGGCCTGACCACACCGAGTGACGGCAACAGGGACGGGGTTTCGTTAAATGACACAGACACCTCCAGCACTAGAGAGAGGAGGGACTCAGGCGTCGGAGCTTCTCTTACACGACCACGGCTTAGATGGCCGAGCTTCAGGATGTCAAACCTGCTCAGCCAATCCGGAATCTCGCTACAAATATCTAGCCAATCGGTGGGCCAGCTTAGCCTGCTGCAGAAGTTCTCTTTATTGCGCCTCACTGCGATCATGGAGAAATACTCCATGTCTAACAAACATGGATGGACTTGGTCAGTGCCAAAATTCATGAAGAGAATAAAGGGACCAGACTACAAGGATAAGACTGTTTTTGGCGTTCCTCTGATCGTACATGTCCAGCGGTATGGACATCCTCTGCCCATGTGCTTACAGCTCGCCCTGCGCTTTTTGAGAAGCCAGTGTTTAGACCAGGTGGGACTTTTCCGTAAATCTGGTGTAAAGTCTCGTATCCAGGCTCTCAGGCAAATGTGTGAAACCTCCCCTGAAAATGTGAACTATGATGATCAGTCTGCGTATGACGTGGCGGACATGGTCAAACAGTTCTTCAGAGACTTACCTGAGCCACTTCTCACAAGCAAAATGGGCGAAACCTTCCTTCATATATACCAGTATGTCCCTAAAGAGCAACGCTTACAAGCTGTGCAGGCAGCAATCATGCTGATGGCGGATGAAAACCGTGAGGTCCTGCAGACTCTGCTGTGCTTCctaaatgatgtcacttcctcagTTGAGGAGAACCAGATGACCCCGATGAACCTGGCCGTGTGCCTCGCTCCATCGCTTTTCCACCTCAACATCATGAAGAATGATAACCTGTCGCCCAGGTCTATTCAAAGGAAGTATGCCACTGGGCGGCCAGACCAAAAGGACCTGAATGAGAACCTTGCAGCCACTCAGGGTCTAGCGCACATGATTGCTGAGTGTAATCACCTGTTTGAGGTATGAGACACATGTTCTGTTTGCAATAAGATCTGCATGCCATGAGAAATTTGTGATTTTATGCAAGagcctgcactgaaaaaaatcattcattggaTTCACAATTTGTTTTAAGTTAAGggtttgcaaacaatttacatgggCTGAATTTGAACATGCAAATTAAGTCGAACATTACTAAAATCAATTTGTTTGTCACAgtgcctgattaataaagggactaagccgaaaagaaattgaatgaataaatgaatgaatgatgaatgaatgaattgtgggtTTGTGCAGATTCCTCAGGAGATGGTGTCTCAGTCCAGGAACTCATACATGGAGGCTGAGCTGCTGGCGCCCTCTATAGACGAGCTGTGTAAAAAACAGCCTCAGCtggacgaggaggaggaggaagaagaagaagaggaaggcACGTGTCGCTCTTTTCTGGACAGCCTGATTCAGAATCTGATGAGGGAGAGCAAAGACAAGACCAAAGGCTGGGTGACCCGATCAAACATCGACAACGCTGAGCTCTCTTTTAAAAAGGTCAGAAGAAATATTATATACTGAagttaaatacttttgttttgttttcgtttGAATGCTTACTTTATAGTAATATATAGTGTTACATAAAATTATAC
>TCONS_00004328
atgaattgtgggtTTGTGCAGATTCCTCAGGAGATGGTGTCTCAGTCCAGGAACTCATACATGGAGGCTGAGCTGCTGGCGCCCTCTATAGACGAGCTGTGTAAAAAACAGCCTCAGCtggacgaggaggaggaggaagaagaagaagaggaaggcACGTGTCGCTCTTTTCTGGACAGCCTGATTCAGAATCTGATGAGGGAGAGCAAAGACAAGACCAAAGGCTGGGTGACCCGATCAAACATCGACAACGCTGAGCTCTCTTTTAAAAAGGTTGGAGACGGGACGCCGTTGAGGCGCTGGAGAGTGTCTGCCGAGGTGGAGGCTCCTCCGTCAGTGGTGCTGAACCGGATTCTGAGAGAGCGCCACCTGTGGGACACTGACCTGCTGCAGTGGAAGCTTCTGGAGACTCTGGACAAGCAGACTGAGGTTTATCAGTATGAGCTGAAGAGCATGGCTCCGCATCCCAGCAGAGACTTTGTGGTGCTTAGGACGTGGAGGACGGATCTGGcgaaaggtgtgtgtgtgctggtgtcgGTGTCCATCGAGCATGAGGAAAGCCCTCATCTGGCTGGAGTGAGAGCAGTGCTGATGGAGTCTCAGTATCTGCTGGAGCCCTGCGGATCGGGAAAATCCAGACTCACTCACATCTGCAGAGCTGACCTCAAAGGAAAGTCTCCAGAGTGGTACAACAAAACTTTCGGCCACGTCTGTGCAAGCGAAGCCATCCGCATCCGTAACTCTTTTCAGACTCTGGATCCTGAGGGCCCCGAGACCAAAATCTGAGCTGCGGGAACTGGGATGTAGTTCAACATCAGGGCAGGTGGTCACCAAAAAATGAACTTTGGagtaaaaaaacagataaaatgaacgtttttttttgtgtgtgtgtgcgtttttagCCCCTAGACAACAACAAACTGCCATGTCATATTAGTTTCATGAACTGTGGATCATTTCAGAGTGTTTTACCCCTTATAGGGCATTTGATTGAGTCGGTTTATTTCCTATAAATGTATGCAGCTGTTCAAAACTGCCACTTTGAGATGGCATTTGTTGCTTGTTTTTTGGGGCATGTGATGAGACGTACAGGGGGAAAGATAAGTactgaacacgtcatgttttttttcctgggaataatatattaaaaggagctgttgacatggaattaaaccagattttggtaaaaaccctaacaatacaaacataaaaatatgacAAATCTGAAAATTTtgttatgtttaatgtttaataacaatgaaatgacacaaggagaaagtgctgaactactgaaatgtatttaatactctatataaaaggcttttttggtgatggcctCTCATATGGAAAATAAAGTCACATGATTTGTGTTCAGGTGTGAGTTTtacacagactttaacagagtgtgaAAATCTTgacggttctgtgggtctcgtctatcaaatctgacctTTATTTTGTAATCTCTactggattcagatcaggtgattggctgggccattctacagcttgattttctttctctgaaagcatttgagagtttccttggctgtgttttggatcattgtcttgctgaaatgtccagtCTGTTTTCATCTTCATTACCCTTATAATGCAGATGttgcagctaatattaatttacaatgacgaaagGCAGAgcgttgctgaagaactactgagagatttcagctgctgtctgggtgtttactgcctttctacaccttcctttctacatgcgttcaatactctttccctgtgtcatttcattttattacacacaacttaatttgtaaactaattagatttgttttccttgcatatatacatttctttGGTTGCTACCAAAAAATAATTGGTAAATTTCAAgtaaacagcacctttagaaatatgagaaaaatggtgatgtgttcaatacttaattTCCCCGCTGTAACTAAAAGATGGACAGAGAAAGTGAAAGAGACAGACTCCGATAAAGCCATGCCTGTTAAAAAAAAGCCGTAACGCTACTTCCTGTTGTCAATGTTTAGCGCAGTTTTAACTAGCTTCGCTTACAGCAAACAGATGTGAATGACGAGCAACCTCACACTAATCCAAACACAGCAGGTCTGGTTTACTTTTACCGAGCACTTCAAGCTAAAGTACTGCATTCTGCAAACAAATGTAGGTACGTTACTGTgtctaaacattatttaaatctcTGTATTTAGGTGTTATTCCTCATTTGAACAACACTAGTGTTACAGTGGCTGTTGTTTTAAATTAGGGTTGTACCCTGTTGTTGTATTGATGTGAAGTAGTTACTGAAAAGCCCatagtatttttaatgtttatcattGTTCTCTTGATTTCTTCATCCCAGGAAAGCAAtaatgtattatcattattataaatgcACCGGTTATTGTTCTCTTCCAACAATGCAAAATTATTAGATTGAAAATCAAAAGTGTAAATTATATAATGCCAATGATTGTTGCagatatgtattattattaatattatttttgtcattgttatATGTTGCTGTGTCACTCTACAATGTCTAGGACATGAATTCATTTCACTGCTTCTGAGAAGCATGTCTATTGTATTCACAAAGCtgtacatttgtgtgtttgtgtgtaaatgtagaTAAATTCCAGGTTGTATATTTTGTACATAAATCAGGCTTACTGGCAGGTTAATCTGCTTTTATGCTATGTTTTTCTCCTCATCatatcaatattttgcttgaaataTCATCACAGGCCAGTTTGATGGTCTGGCTTGTTCAGTGCTGTTTTGATGGGAACAGTGTGTTTGAGTTTTGACTTAAGCTCAGAGGCAGGGGGAAAGCGATGTTGTGTCTGTTTTTCAACAGTAAACAGGGTGAATGAAGTTCCAATCTTTTGGAAATGTGGAAAATAAAACCTCGGTGAGATAACTGTTGTCAATTGTTGTGTATGTTTGGCTTTGAATGTGacatttttattcacagaatttATTCCTCAATTTTCTTCAAGGATTCGCTCATGAG

Function

symbol description
stard13a Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13).

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-18 Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13).

Ensembl:

ensembl_id ENSDARG00000079542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004325 False 3354 mRNA 0.53 15 34315719 34402535
TCONS_00004326 False 396 mRNA 0.49 5 34321492 34370206
TCONS_00004327 False 2591 mRNA 0.48 6 34377697 34394824
TCONS_00004328 True 3019 mRNA 0.40 4 34394454 34404768

Neighbor

gene id symbol gene type direction distance location
XLOC_002263 NA coding upstream 75881 34239060 ~ 34239838 (+)
XLOC_002262 BX510654.2 coding upstream 79295 34236168 ~ 34236424 (+)
XLOC_002260 BX548044.3 coding upstream 95478 34175468 ~ 34220241 (+)
XLOC_002261 NA coding upstream 122413 34190542 ~ 34193306 (+)
XLOC_002259 BX548044.2 coding upstream 144294 34151286 ~ 34171425 (+)
XLOC_002265 nbeaa coding downstream 21488 34426256 ~ 34734995 (+)
XLOC_002266 CT573139.1 coding downstream 532780 34937548 ~ 34951865 (+)
XLOC_002267 rfxap coding downstream 553815 34958583 ~ 34961758 (+)
XLOC_002268 exosc8 coding downstream 598018 35002786 ~ 35011502 (+)
XLOC_002269 NA coding downstream 649543 35054311 ~ 35058561 (+)
XLOC_002258 BX548044.1 non-coding upstream 168474 34124421 ~ 34147245 (+)
XLOC_002271 NA non-coding downstream 831580 35236348 ~ 35242028 (+)
XLOC_002277 NA non-coding downstream 964824 35369592 ~ 35414277 (+)
XLOC_002282 BX663516.1 non-coding downstream 1239951 35644719 ~ 35644798 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G232639 oxgr1 unknown NC_053135.1 CM020932.1 5053925 ~ 5054300 (-)