XLOC_002294


Basic Information

Item Value
gene id XLOC_002294
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36201184 ~ 36381043 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005924
CCTGCGTCCATTTCACGTTAGAAAGGGGAGAGctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAACTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGAAGAGGTGCTCTGGGAAATGGACATTAGAGATCATTAGAAAGTGCTTCATGTAAACACTGTGACTGCTGTTTGTCTGAAGAGTGTCAACATATTTGCTACACGCTCTTAATTTGCTCTCTGGAGAAACCAGACAGACCCTGATGAGCACAGACTGAAGGGGAAATCAGGCCTCAGAGAATTTTCACAGAGTGGATGAGTGACAGGAGCAATTAATGAAGACACTGACAATCACAAACACTGAAAACCACCTGAGATCTGAGGAAGAAAACATTCTGTGTTATCTTGTTGATGGCAACTTTAAGAGatttaatagtattttaataaTCAACTATGTTCATGTTTCATATTTTATAAGAATtgtaaaatatatgttatatttcAC
>TCONS_00004376
TTTCACGTTAGAAAGGGGAGAGGTAAGACTCAAGATCAGGCTACGGTTCATTTGCAGTATATTAGAATTGGAGTCATGCTTCAATTTTGAACCACACCAATCAATGACCAAAGTTGGAAAATCAGCCACCAGACTTGCAGATAAGCGCATctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGCTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGGTCTTTCATGGATTCCATGACCTCCTCTGTCTTCAGAGTGTATATGATGGGATTCAGCATAGATGGTATTACCTGTCTCAAAGAGTTGTTAAATATTCGTGTGTTTGGATCAA
>TCONS_00004377
ACGTTAGAAAGGGGAGAGGTAAGACTCAActgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAACTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGGTCTTTCATGGATTCCATGACCTCCTCTGTCTTCAGAGTGTATATGATGGGATTCAGCATAGATGGTATTACCTGTCTCAAAGAGTTGTTAAATATTCGTGTGTTTGGATC
>TCONS_00004378
CGTTAGAAAGGGGAGAGctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAACTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGAAACCAGGGCCTGTTTTTACCTATTTGTTAGGCCAACTCCATGAACTTTGAGTGACACCCAATCCCTAAAGCCTGGTCTTTGTCAtcatgagggggaaaaaaaaaATGACATCATCAAGCCCTCCCTACACAACTCCCAATGGACAAAACCTACATGTATATCACACCAAGTACATCATTCTATGGGCAAATTTTTTTCTATGCCACCACTGGGTATgaggaaaataaaaaatgtaaaac
>TCONS_00005925
GGGAGAGGTAAGACTCAAGTACGTAAACTGTCATGATTTTTACTGGagttttgtaaaaataataatgattattacttACTCAAGGAATATGAAGTTATCATATTGTCGTCATATTTTATCGTTCTAATCGAAAGTGTGCATTTATAAGGACTAAAACGAGCGTTTTCAAAGAAGAGTGAGTGTGTCagcatattttacaatatttcttagtgaatagttaaaaaataatgcatataAATAGATATAACATTACCTTCACGTTTCAATTTCTTTATATTTTGTGAAACAACTGATACTCCAGTGTTCAAGACATTACTACTTCAAAGGACTTGCCAAGTCTAAAATACGAGCTAACATCATGTTAAGGCCTTCTAACAAATGATACCGCTAACATCAGTGATGTGTATAAATACATCAGTTCACAATGGGCATTTTTAGGACACTGTGAATAtcaagttgttttattttttatatatttttttactactGTGGTTTCTGTTAAATGAGGTATAAGTGCCCTGTAATGATAGGCCTGTCAAAAGAGGCCTACACCTCCCGCCTCCATTTTCAAGCGgattgaagaaaaaaagaagcaaaaatgtCTCCCAAAGTAATTTATAAATGGGTAAATTATTCCCCAAAATatttgtctttatatatatacagtactatAAATCTCAAAGTCCCTAACCAACCAATTGAATCAAAGAAGACAGAGCTTtactgtttactgttttttttgtaCACTGATTCATGAGCCCATTTTATAAGTAAAAGTGTGTAACTAGTTCTTGCTGATTATTTCACAATGTTTGTTTTTCAGGATCAGGCTACGGTTCATTTGCAGTATATTAGGTATTAATATTATGGTCAGACAATGTAGTTAGCATTATCAAAGTGACATATTTGGCATTAATGAAACATAATGCCAAATATGtcattatattatttaacataCTTTTGCTATAAAATTCAATCCACAATCAGAATCCTAAAACAATTTGTAATTGCTTTATCACCATGTTTTCTAAAGTGTATGCTAGTTTTTgctatatttcattatttacacATTAATTTAAAATGGCAGAATTGGAGTCATGCTTCAATTTTGAACCACACCAATCAATGACCAAAGTTGGAAAATCAGCCACCAGACTTGCAGATAAGCGCATGTTAAATTGAGAATCTATTACTGTTATGTTGTATGTCAGTAAAGCAATACACTTATTCTGGGTCTTCATGGCCATACCAATTGGCAAAAGTTGCTAAACATTAGCTTTTGAGCAGAATCAGAAATTTGAATGTTTAAATATAGTttaacttgacatttaaaaactgttaatgcatttttttgtttgttttttttagctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAAgtaagtaattaatttattttgagtTCATTAATCagtttattataaaacataaaagttATACAACAGAAAGTCTAATGTGAAATAAATTAAAGTCTaaagcatacattttttttggttTTCCTTTATTTTACTCAAACATGCACTTTATAGGGATTGTTCACGGAAAGCTGAAaattgccatcatttactcagcctttgcTTGATCCAAACCTGTTAAACTTTATTTGTTGTTGAACAAAAAAGGTGGTATtttagaagaaagctgaaatcctgtaactagtgattttcatttcatgtttgtttttctacaatataagttaatggttacagattttcattcattcattttccttcagcttagtccctttattcatcaggggtcactacagcggaatgaagcgccacCTTATCAACCATATGTTTTaagcaacagatgcccttcccgctgcaacccagtacttggaaacgtccatacacactctttcacacacatactttatgaacagtttagtttattcaattcacctttagtggatgtatttgaactgtgggggaaactagagcttctggaggaaacctacgccaacacggggagaacatgcaaactccacacagaaatgccaaatgacccagccgggactcaaaccagcgactttcttgctgtgaggcgacagtgctaaccactgagccaccttgtcgccctgaaggttttcagcttttttcaaaatatcttctttagtgttcaacagaatgaagAAAGTCAGAAAGGTTTGGCACCACCTGAGGGTTAGTATATAGTGAATACATTTAAATCTTTAAGTGAACTATCACTTCAAGTAATTTTGCTAAGCTCAGTAGGTTTGTAGGTTTTtgtatggttttaaaaaatgcataattaGATGTTTGGTTCTTTTATCACAGCTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAG
>TCONS_00004379
ctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAACTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGATTTGCAAAATGCTATCGAAGAACTGGACGACAATCAGTGAGTTTATTATTGTGGGCATCCCTGGACTGCATCCAGACTACTATGGCCTGGTTTCTGCCATTTTCTTTGTCATCTACATAACCACAGTGGCTGGAAACATGTTTTTTCTAGTGCTGTTTGTCACTACGGAGAGCCTCAGGAAGCCTATGTACATCATCTTAGCAAGTCTGGCATTATCTGATATGTGTTTCTCCACTGTTGCCCTGCCTAAGATCATATCCAAATACTGGTTTAATGCAGGAGCGACCCCTTTCCATGCTTGTTTCTTCCAAATGGAGCTAATCCACTATTTTGGGTCTTTAAATTCACTGATAATGATGATTATGGCACTTGATCGATATGTGGCGATTTGTTATTCTCTCAGATACCAGACTGTTATGACAAACCGTGTAACATACATCCTAATTACCACTGCTTGGATAACAGCTTTTATCGCACCAACAGTAGCCACGCTAGACACACAACAGCTTCCATACTGCGGCCCTAACCTCATCCTTCAATGCTACTGTGATCACATCTCCATTACTAACTTGGCATGTGCTGAAAACAGCAAGCAGTTGTTGGTGGCCCTGTGTATGGCTCTGCTGGTGCTACTTCTTCCTCTAGTTTGCATCATTTACTCTTACT
>TCONS_00004393
TCACTTTTCACATATAATCTTTGCAGATTTGCAAAATGCTATCGAAGAACTGGACGACAATCAGTGAGTTTATTATTGTGGGCATCCCTGGACTGCATCCAGACTACTATGGCCTGGTTTCTGCCATTTTCTTTGTCATCTACATAACCACAGTGGCTGGAAACATGTTTTTTCTAGTGCTGTTTGTCACTACGGAGAGCCTCAGGAAGCCTATGTACATCATCTTAGCAAGTCTGGCATTATCTGATATGTGTTTCTCCACTGTTGCCCTGCCTAAGATCATATCCAAATACTGGTTTAATGCAGGAGCGACCCCTTTCCATGCTTGTTTCTTCCAAATGGAGCTAATCCACTATTTTGGGTCTTTAAATTCACTGATAATGATGATTATGGCACTTGATCGATATGTGGCGATTTGTTATTCTCTCAGATACCAGACTGTTATGACAAACCGTGTAACATACATCCTAATTACCACTGCTTGGATAACAGCTTTTATCGCACCAACAGTAGCCACGCTAGACACACAACAGCTTCCATACTGCGGCCCTAACCTCATCCTTCAATGCTACTGTGATCACATCTCCATTACTAACTTGGCATGTGCTGAAAACAGCAAGCAGTTGTTGGTGGCCCTGTGTATGGCTCTGCTGGTGCTACTTCTTCCTCTAGTTTGCATCATTTACTCTTACTGTCACATCATAGCATCCGTTATGAGGCTGTCAAGCTCTCAGAGTCGCTGGAAGAGTTTTGCCACGTGCAGCACTCAGTTGTGCATCATCACACTATTTTACATGCCACGCTTTACAGTCTATCTTACCACTTTCCTGCAAATCCAGATCAGCAAAGATTTCAGAATACTCCTCGTACTGATCTATTGCCTCGTCCCACCCCTGGTAAACCCGTTCATCTACTGTTTGCGGACACAGGAGATCAGAATGATTGTGAGCAGATGGGTGAGCAGGCAACAGGCCTTAAGAGTAGCTTGCAAAATTAATGTCATCACGCTCTGAAATGATCTGTTCTGTGGagttttaatacaaaaaataaactgaTTTGTTCAACTGTTCGGTTTAACTATGAAGTGTGAAGTCTTTTGATGAAACCTGGTGGTTTCAGTACAAGAAAACTTCATAATATGTGCTTTCAAATAAAAGACGTCATTAATAAAAGTTAAATGATTAACAG

Function

GO:

id name namespace
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070806-54 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000068660 ENSDARG00000103268

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005924 False 519 lncRNA 0.39 4 36201184 36342453
TCONS_00004376 False 362 lncRNA 0.42 6 36201194 36224880
TCONS_00004377 False 244 lncRNA 0.42 4 36201198 36224878
TCONS_00004378 False 361 lncRNA 0.42 5 36201199 36381043
TCONS_00005925 False 2393 lncRNA 0.33 1 36201209 36203601
TCONS_00004379 False 771 lncRNA 0.43 3 36202577 36345868
TCONS_00004393 True 1188 mRNA 0.42 1 36345176 36346363

Neighbor

gene id symbol gene type direction distance location
XLOC_002293 COA4 coding upstream 1133 36197968 ~ 36200051 (+)
XLOC_002292 or108-1 coding upstream 4966 36194527 ~ 36196218 (+)
XLOC_002291 or108-2 coding upstream 14838 36184751 ~ 36186346 (+)
XLOC_002290 or108-3 coding upstream 21093 36178713 ~ 36180091 (+)
XLOC_002289 BX088524.3 coding upstream 40897 36158967 ~ 36160287 (+)
XLOC_002310 uspl1 coding downstream 58250 36439293 ~ 36455985 (+)
XLOC_002311 alox5ap coding downstream 77520 36458563 ~ 36463715 (+)
XLOC_002312 ucp3 coding downstream 269179 36650222 ~ 36656693 (+)
XLOC_002313 ucp2 coding downstream 281597 36662640 ~ 36673388 (+)
XLOC_002314 rab6a coding downstream 314554 36695597 ~ 36711701 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 556049 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 556386 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 786907 35369592 ~ 35414277 (+)
XLOC_002271 NA non-coding upstream 959156 35236348 ~ 35242028 (+)
XLOC_002315 CU694807.1 non-coding downstream 345195 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 423993 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 579533 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 766626 37147669 ~ 37147784 (+)
XLOC_002325 NA non-coding downstream 1097202 37478245 ~ 37478556 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17495038_17496015 OR105-1 coding CI01000304 null 17494651 ~ 17496208 (+)