RNA id: TCONS_00004378


Basic Information

Item Value
RNA id TCONS_00004378
length 361
lncRNA type antisense
GC content 0.42
exon number 5
gene id XLOC_002294
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36201184 ~ 36381043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTTAGAAAGGGGAGAGctgaTGACCACTAGTTGTGATGTTGGTGGATAACCAGGAGGTGTTTGCAGTCAGTCAGGTAAACTTGCCAGCGATTTCAGTTGAAGGAAAAGTTGAACAAGAAGAAACCAGGGCCTGTTTTTACCTATTTGTTAGGCCAACTCCATGAACTTTGAGTGACACCCAATCCCTAAAGCCTGGTCTTTGTCAtcatgagggggaaaaaaaaaATGACATCATCAAGCCCTCCCTACACAACTCCCAATGGACAAAACCTACATGTATATCACACCAAGTACATCATTCTATGGGCAAATTTTTTTCTATGCCACCACTGGGTATgaggaaaataaaaaatgtaaaac

Function

GO:

id name namespace
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000162127

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005726 lncRNA upstream 749119 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 786922 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 789980 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 811502 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 908968 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00004404 lncRNA downstream 281646 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 281649 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 286953 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 320797 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 324581 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004375 mRNA upstream 1148 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004374 mRNA upstream 4981 36194527 ~ 36196218 (+) True XLOC_002292
TCONS_00004373 mRNA upstream 14853 36184751 ~ 36186346 (+) True XLOC_002291
TCONS_00004372 mRNA upstream 21108 36178713 ~ 36180091 (+) True XLOC_002290
TCONS_00004369 mRNA upstream 44541 36155366 ~ 36156658 (+) True XLOC_002288
TCONS_00004397 mRNA downstream 58250 36439293 ~ 36455985 (+) False XLOC_002310
TCONS_00004399 mRNA downstream 60081 36441124 ~ 36455979 (+) True XLOC_002310
TCONS_00004400 mRNA downstream 77520 36458563 ~ 36463715 (+) True XLOC_002311
TCONS_00004401 mRNA downstream 269179 36650222 ~ 36656693 (+) True XLOC_002312
TCONS_00004402 mRNA downstream 281597 36662640 ~ 36673388 (+) False XLOC_002313
TCONS_00004370 other upstream 40912 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 41012 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 556064 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 556401 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004347 other upstream 902500 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004398 other downstream 58263 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 281626 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 579533 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 766626 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2107665 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile

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