RNA id: TCONS_00004401


Basic Information

Item Value
RNA id TCONS_00004401
length 1676
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_002312
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36650222 ~ 36656693 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACAGGCCGGTTCCTCCAAAATCAGGTGGAAAACACACTCGCTGGATTAACCCCTGCATGGATATTATCATCTCGCTTTCTGTCGGTACAGTTTGGACTAACAATTTCATATTACGGCAAGTGTTGTGCTGCTGTTATGCTGCTTTGGGACATTAAGGATCAGTTTTTTATGGCCAAAAGTGTTGAAACatctaaaacagaaaatatccttTTGGAAAAAACTTGAAGTGAACCGACGTGGAGGCGGGAAAACACAAGTTGAAAGTAAAAGTATAATTCCCTTGCTGCGGTTTTCTGTCAGAAGTGAAAAATGGTTGGAATTAAACCTACCGATCTGCCTCCAACCGCTGCTGTCAAGTTTTTCGGAGCCGGTACAGCAGCATGTTTTGCTGATCTGGTGACTTTCCCCCTGGACACAGCAAAAGTCAGACTTCAGATCCAGGGAGAGTCTGGAACAGCACCAGGATCAGCGGTGCTGAAATATCGTGGGGTTTTTGGCACCATCACCACTATGGTTCGCACGGAGGGGGCCAGGAGCCTCTACAATGGCCTGGTGGCAGGACTGCAGCGTCAAATGAGCTTTGCTTCTGTGCGCATCGGCCTTTACGACTCAATGAAGCAATTCTACACCAGAGGatctgagaATGCGAGTATTGTGACGCGTCTGCTGGCTGGATGCACCACAGGGGCCATGGCGGTCGCATTCGCTCAGCCCACAGACGTCGTAAAAGTGCGCTTTCAGGCTCAAGTGCGTCACACTGACGGAGGAAAGAGATATAATGGCACAATGGATGCCTATCGGACTATTGCCCGTGATGAGGGTGTTCGAGGACTCTGGAAGGGCTGCATGCCAAACATCACAAGGAATGCGATCGTGAACTGCGCAGAGCTGGTCACCTACGACATCATCAAGGATCTCATATTAAAATACGACCTCATGACAGATAACCTACCCTGTCACTTCACGGCTGCATTCGGCGCTGGTTTCTGCACCACGATTGTAGCGTCTCCAGTAGACGTGGTGAAAACGCGGTTCATGAACTCGTCGGCCGGCCAGTACGGCAGCGCACTGAACTGTGCCCTCATGATGCTGACCAAAGAGGGACCAGCCGCTTTCTACAAGGGCTTCATGCCCTCCTTCCTGCGCTTGGGATCCTGGAATATTGTGATGTTTGTTTCCTATGAGCAAATCAAGAGGTGTATGACTCGAATGCAGCACTCGTGGGAATCGcctttctgaacacacaacatcaGTATCTTCTAACTGTGACTGAACAGACAGCAAATATAACTCAAACGCCCTGTTGTGAGAATGGAGGAATCCCCATCTGAAGTCTTATCACTGAAAAAAGGCTGCAGTGTTGTAAGGCCAAAGGTCAAGCTCATCAAATATGAAAGATGAGTTAGCAAAGTGCCCGATGAAGCAAAATGTgcatattgtctgttttagggaGTTGGAAAAAGCACactcttaaagaaacagtgcAGGGAAAAACAAAAATGCCTTTTCACATGGCTTTTCTTTGACATATTTTGAGTAAATCATCAGTGCCAGTAAATAACCTTTATTTTGAagtgtgtaaatgtttttatatatacatatgttaaatgtttctaAAACTGTCATGAATACGGGTCCATAAATTCTgatcaataaatgtatatttatactaA

Function

GO:

id name namespace
GO:0009409 response to cold biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:1990845 adaptive thermogenesis biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017077 oxidative phosphorylation uncoupler activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1317 Predicted to enable oxidative phosphorylation uncoupler activity. Predicted to be involved in adaptive thermogenesis; mitochondrial transmembrane transport; and response to cold. Predicted to act upstream of or within mitochondrial transport. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in coronary restenosis; diabetic neuropathy; glucose metabolism disease (multiple); and obesity. Orthologous to human UCP3 (uncoupling protein 3).

Ensembl:

ensembl_id ENSDART00000126963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004378 lncRNA upstream 269179 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00004379 lncRNA upstream 304354 36202577 ~ 36345868 (+) False XLOC_002294
TCONS_00005924 lncRNA upstream 307769 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA upstream 425342 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 425344 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004404 lncRNA downstream 5996 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 5999 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 11303 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 45147 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 48931 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004400 mRNA upstream 186507 36458563 ~ 36463715 (+) True XLOC_002311
TCONS_00004397 mRNA upstream 194237 36439293 ~ 36455985 (+) False XLOC_002310
TCONS_00004399 mRNA upstream 194243 36441124 ~ 36455979 (+) True XLOC_002310
TCONS_00004396 mRNA upstream 293580 36354863 ~ 36356642 (+) True XLOC_002309
TCONS_00004395 mRNA upstream 299529 36349233 ~ 36350693 (+) True XLOC_002308
TCONS_00004402 mRNA downstream 5947 36662640 ~ 36673388 (+) False XLOC_002313
TCONS_00004407 mRNA downstream 38904 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004408 mRNA downstream 38954 36695647 ~ 36710620 (+) False XLOC_002314
TCONS_00004412 mRNA downstream 84809 36741502 ~ 36749651 (+) False XLOC_002316
TCONS_00004413 mRNA downstream 84809 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004398 other upstream 207375 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 361719 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 489935 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 490035 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 1005087 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004403 other downstream 5976 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 303883 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 490976 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 1832015 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1891396 38548089 ~ 38548205 (+) True XLOC_002336

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17694317_17697897.mRNA True 1641 mRNA 0.44 8 CI01000304 17694193 ~ 17698238 (+)