RNA id: TCONS_00004397


Basic Information

Item Value
RNA id TCONS_00004397
length 3556
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_002310
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36439293 ~ 36455985 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGTTGATCGTACGACGGGGAGCATGCACATGGAAATGTCTCCTACCGGCGTGCTGGAATTACCGAAAGTGTGTATAAAATCCAGTCTGGAGATTCTCCGCATCTGCACCGGACTCGAGTGCGTTCAGGTGGTGAGCCAGGTGGCACGGTTATATCAAGTTTATGGCAGCAGGACTCGTCAGAGAGCAGAAACCTCAGTGGCAGGAAAATGAACGGCGAAGGCACTGGTATAGGGGCTCCGACCCCAGCGTTGGCGGGGTTTTTGGGAAAAAGTAAAGACAGAAATGCTTCACCCGGGAACTGTCCTTGGTGCTTGGCGAAAGGTCAGACAAACGCCCTCCGCTTTTATGCCGTCAACCTAAAGGAGACTGTTCTGCTCTGTACAAATGCAGTGTGCCTTTACCCGTTGGTTAGTAGATCTCTGGAAGAAGTGCGTGCTAGTTTATCCAAAGGTGGATGCAAAAGGAGCATTTCTTCCCTTCCCGACATCAGTGATGACTCCTGTCCTCCAAAACGACCCAGAGAAGAGAAACTGGATGTTCTGGCAGATGTTTCTGAGCCATGTGATGCTGAAGTCAATGATGCCACCCTTCCAGACGACACTGTCAAAACTCAAACGTTTACAGATCAACAGTCAGCACCTGCAGAGACTATTTCTCTTGATAAAACTGAAGAACAACCTGTTTCTATAGAAGACATTAAGGAACAACCTATCTCTCATGATGCCACTGAGGGGCAACCTATATCTATTGATCAAACTGAGGAGCAACCCGTTTCTATTCTTCACACTGAGGAGCAACCTATAGTTCTTGATCTCATAGAAGTAAAACCTATGTCTGTTGATCATTCTGAGGAACAACCTATCTGTATTGATAACACCAAGGAACGACCTGTTTCTATTGTTCACACTGAGGAGCAATCCATAGTTCTTGACCTCTTTGAAGTTAAACCTATGTCTATTGCTCACACTGAGGAGAAACCTACATCTTTTGATCACATTGAGGAGAAGCCTATGTCTATTGCTCACACTGAGGAGAAACCTGTGTCTCTTGTTCACACTGAGGATCAACATTTGTCTATTGATCAAACAGAGGAACAACCCATCTCAATTGATCCCACAGAGGAGCAACAACCCGAGGAATTACCTGCTGTCTCTGATGAGGATGTAGACTTGTGTGAAAGGAAGGAGGATTGTGTATCCAGTACTCAAGATGAGATGGAGGAGGAGGTCTTGGAGAGTTCTTCAGAGCTGGTCCCGGTTCATTCTGAACTCTTCTGGAAAAACGAGGAGAACATGTGCTGGTTGGATGCGATGTTGGTGATGCTGGTGCACTGCAGGACCATCAGAGGGACTCCATGTCGGGGCATAAAGCTGAGCGATAAGTTGGCAACAGTGCCTTGCAATGATTCTGTCGTCTGGAAACTTTGCTGGAGATATGATAAAACGTGTGCCTATCTCCAAGCCAGGAAGAAACAGAGCGAAGATAAAGTCTTGCGAGTCCCTGCTGGAGTCCTGGTTGAGGCTGAGCGGCGTCTGTCTGCTCTCCGGCTCTCAGTCTTCAAGCTTCTTCAGCCTACACTCAAGTGTGAAATTGGTCAGCAGGAGACACCAGTGTTCGCACTCCCGCTTCTTCTGCGCTCAGACAAGTGGGCTCAGGATATTTTCCAGCACACTATCCGATGGGAGTTCAAGTGCACTTGTTGTGACTTTACTGTAAATGAGAGTGTTGAGAAGACTCTGACAACTTTGACTTGTATTGTTAAGGACTGGCATCCGCTAAAAGCCAATAATCGCACTCAGTGCAACAAATGCGAGCACAAAAACCAGAGGAGGAAAATGGTGCTTGAAAAGCTGTCCTCTGTGTTTGCGTTGCACTTTGTGGAGGGTCTGCCCAGGAAAGACCTTACTAAATACGGGTTTACATTCCAGGGCTTTCAATACAGCGTTAGCACTATTATCCAGTACAACAAACATCTTCAGCACTTTGTCACTTGGGTCCGTCAGAGCAATGGATTTTGGCTGGAACTTGATGACCTTAAACACCCTTACAGCCCCACTCACAAGAGACTTCCTTTTCCCTCCAGTGAATTTCACATTCTCTTCTGGGAGACAGACTCCTTTAAAGAGGAGCATTCCGAGGTTTGTTTACCGACAGCTCCCCCTGAGGTCCCGAATGCCCCTGATGAACATCCTCCAAAACTGTCAGACTCTGTGGCCACCGACACATGCGTGATCAGCGCACTCACAGTGGAAGACACGACTGCAAGCAGCATTGCGGATACATCCATAGGCAGCACCACACTACTGGACACATTTGAAGGTCTGACCCATAAAGACATCGTAACCCTCACTCTGGTTAATTCTGAATCCCCCAAGAATGAACCGCGTCCCATGAGACCAGGCTTCGTGTCGGCTCCTCGTCACTGTCCTTTTGAAGCATCCAATTTGTTGTCTGGAATCCCCAAAACCGGGAGTCGACTTTCAACCCCTCCAATTCCTCAGAAATCTAGCTTAGTACACAAACCAGAGGTGGCAGCAGCAGCCGtatcaaaaacacatttacagcctACATCATTATTTCAGCGTCATCCTTCCTTCCAGTCTACACCAATCagacctcctcctcctcttcctcctgctcCAAAACCAAAACCCAGTCTGCAATATGACAAACATGAAGATCTGCCTGTGAAGCCGGCTGACATGTTTGGCGGCTTCAAGACAAAGAAATTGGCAAATTCTCAACCCAAACAAATCAGCCTTCCGGGTGGCCTTAATCCAAGTGTTAAGAAAACGGCAGGGCAGGAGCCCATTAGCACTACAGAAGCCCTCAGGCTGAAGCTAATGAAAAAGCTGAAGGCCAAGAAAAAGAAACTGGCCAAGTTAAACCAGCTCCTGGGAAATGGAGGGGAATCTGTGGCCAAACCGGACAGCACTGCACTTTCATCACCGTATTCAGTCACTTCTAGTACCACAACATACGACAGCTTTGATGACCAGTTTTTGGCTGATCTTCTATCTCCTGCGACGACCGTCAGTAACCTCTCGCCTGACAGTACGGGTCTCCTCGAGATGTTGAACAATGGCCAAAACGGCGAACAGCAAAATCCTGCTGTAGCAACTCTTGCTCCTGAAGCAACCCTAACCTGCTCTTCTTCCACCATATCGCCTTTAGATGAATACATGCAGTCAGGGATGTGCCACACTGCACTCGAGAACGCTGATTTTAATAGCTTGGATATATTTTTCTGATTTGAAGAAAACTTTTAGATGTTCAGAGTCATTGAGTTTTGCCTGGTGTTAAGATCGATTTAGTTTTGCATTGGTGAAAACAGGAAGACCTTTGTTAGCAAAGTATGCGGCACATCATCTGTTAGTTGTTCATGTTTTGCCTGATCTACTTGAAGAACATTACGCCATGTTTGACGATCAAAGTAAGCACAATGTACTTGTAAAGTTTTGTACAGAGTTGTCTAATGCTTTTGCGTTGTTATTTTTTATGGATTTCACCGTATTTAAACTGTTCATATTAAATTGTTCCAGAAAACTGTAAA

Function

GO:

id name namespace
GO:0008283 cell population proliferation biological_process
GO:0006508 proteolysis biological_process
GO:0030576 Cajal body organization biological_process
GO:0016926 protein desumoylation biological_process
GO:0015030 Cajal body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0032183 SUMO binding molecular_function
GO:0070140 SUMO-specific isopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040930-7 Enables SUMO binding activity and SUMO-specific isopeptidase activity. Involved in Cajal body organization; protein desumoylation; and protein localization to Cajal body. Located in Cajal body. Orthologous to human USPL1 (ubiquitin specific peptidase like 1).

Ensembl:

ensembl_id ENSDART00000043802

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004378 lncRNA upstream 58250 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00004379 lncRNA upstream 93425 36202577 ~ 36345868 (+) False XLOC_002294
TCONS_00005924 lncRNA upstream 96840 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA upstream 214413 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 214415 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004404 lncRNA downstream 206704 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 206707 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 212011 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 245855 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 249639 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004396 mRNA upstream 82651 36354863 ~ 36356642 (+) True XLOC_002309
TCONS_00004395 mRNA upstream 88600 36349233 ~ 36350693 (+) True XLOC_002308
TCONS_00004394 mRNA upstream 89253 36349225 ~ 36350040 (+) False XLOC_002308
TCONS_00004393 mRNA upstream 92930 36345176 ~ 36346363 (+) True XLOC_002294
TCONS_00004392 mRNA upstream 102756 36334502 ~ 36336537 (+) True XLOC_002307
TCONS_00004400 mRNA downstream 2578 36458563 ~ 36463715 (+) True XLOC_002311
TCONS_00004401 mRNA downstream 194237 36650222 ~ 36656693 (+) True XLOC_002312
TCONS_00004402 mRNA downstream 206655 36662640 ~ 36673388 (+) False XLOC_002313
TCONS_00004407 mRNA downstream 239612 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004408 mRNA downstream 239662 36695647 ~ 36710620 (+) False XLOC_002314
TCONS_00004384 other upstream 150790 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 279006 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 279106 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 794158 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 794495 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004403 other downstream 206684 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 504591 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 691684 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2032723 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 2092104 38548089 ~ 38548205 (+) True XLOC_002336

Expression Profile

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