RNA id: TCONS_00004392


Basic Information

Item Value
RNA id TCONS_00004392
length 2036
RNA type mRNA
GC content 0.33
exon number 1
gene id XLOC_002307
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36334502 ~ 36336537 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaaagaGGAGCAGCTAAAAATCTTGCATGCAATTTTAAAATTCACTGAACATTTTTAAAGTCTAAACATTTTTTCAGGATCTAAGGAGGAATGccataagaaaaaaagaaaatcttgtatatcttatttgtatttttttttaatgattaaatctCTTTTTGTGTTTCTTTTGAAACTGTACTTCAACCTCAGAAGTTTTCATCACCTGGCTGTTACAGATGCTATATACATGTTTTTGCCATTTTCTTTCACAGGAGCTTTTTTTCTGTGCATATATGAGTACATCAGGGATTTTGTTTAGGTTATTTTGACTTGTAGTGGATGAGTTTGTGTCTATTTGTTTAAAATTTGACAAAATATGGGAAATTATACTGTTAATAATGTTGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTGCTTGGATCTCTCATCTTGATAACCTACATACTCGTACTGCTTGGGAATGGCATCAATCTGTGTGTCATCTCGACTAACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGATGTAATGTATTCATCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGATGTTAAAACTGTTTCATACTACTCTTGTATCTCCAGGATGTTCTTCTATCATATTGGTGATTTCACAGAGTGTATGGCTCTGACATTAATGGCAATAGACAGACTTATCGCCATCAGGCTTCCATTAAGATACCACAGCATTGTCACTAATTCAAGGACATTTCTTTTCATTGTACTGACTTGGGTGATTGCAATCGCTTTAATGGGTGTCTTGACATCAGCAGTAGACAATGCCCCATACTGTCAGCCTGTCATCAAGTATGTGTTCTGTGATTATCCTTCCATGATCAGAGCTGCTTGTGTTAATCCTGAGCCATACTTTTTCCTGCCTGCAATGATTAATCTGTGGTGGTTCTGTGGACTGTTTCCTTTTGTTATGTGCACGTATGCTGTTCTGGCATATAGTGTGACTAAACTCTCCAATAATTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCACCTTGTTGTCCTGCTCAGTTACTATGCACCGAAAATAGTTTCTGCATTACTCACTCGAATAGGAGTTGTGTTGACTTTGACAGAGAGAAATGCAATACTGATTATTTCATCGCTTATTCCTCCATTAATCAACCCCACTGTTTATTGCACCAGGACTAAAGAGATCAGGAAACGGTTAGCAGATGTATTTTTACACAGAAAAGTTGCACCAAATAATTTAAAGGTTTTAGcataattattattgtcattctggatggatggttgatgatttgctgtttctttttttttcttttttttgtgatgctcatgttaaaaataaaacaaatgcagagATGTTTATATGTTGTTGTGTAATGGACAACAAAAGGTCAATCTAGAGATCAtactttattattagttattgatCATTCTAAGTAGTTGATTTTATAATTACAACAGCATATTTACATTGCTTTTTACTTTACTGTACATAACATCAGCTTGGTACTATCAAAATTAACACAACTCAAGTCAAAGTTGctgctaaaaaatatatatatatatatatatatatatatatatatgtttctttaaatgaaaaattCATGTTAAGCTGTGTTTAATGTCAAGTTTCTAtttctgaatttttttatatatattagtgACACTGCAGCTGAAACAATAGCATGaactaataaaataactaataaccTCTGGTAataattatgtgctttattcaggtTTATGAAGTAAGTTTGAAAACCATTTTGTTTGACATTTGTTTGACAATTATAAATGCGATGGCATACTGAAAATGCCAGCacatctttaaaatttaaaaaaactagcACATGAACTGTAGAACttttttttccataatatttttatttttcgttttcagtttgtacacattgaaatactgcattttacaacaataataacCTTGTTGCgtttacaaattatacaaaatatg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-2 Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000099400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 109622 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 109624 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 130901 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 882422 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 920225 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 326152 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 326155 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 331459 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 365303 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 369087 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004391 mRNA upstream 4017 36328702 ~ 36330485 (+) True XLOC_002306
TCONS_00004390 mRNA upstream 9358 36322894 ~ 36325144 (+) True XLOC_002305
TCONS_00004389 mRNA upstream 17744 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004388 mRNA upstream 23945 36309072 ~ 36310557 (+) True XLOC_002303
TCONS_00004387 mRNA upstream 29571 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004393 mRNA downstream 8639 36345176 ~ 36346363 (+) True XLOC_002294
TCONS_00004394 mRNA downstream 12688 36349225 ~ 36350040 (+) False XLOC_002308
TCONS_00004395 mRNA downstream 12696 36349233 ~ 36350693 (+) True XLOC_002308
TCONS_00004396 mRNA downstream 18326 36354863 ~ 36356642 (+) True XLOC_002309
TCONS_00004397 mRNA downstream 102756 36439293 ~ 36455985 (+) False XLOC_002310
TCONS_00004384 other upstream 45999 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 174215 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 174315 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 689367 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 689704 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004398 other downstream 102769 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 326132 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 624039 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 811132 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2152171 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17478774_17479733.mRNA True 2428 mRNA 0.35 1 CI01000304 17478357 ~ 17480784 (+)