RNA id: TCONS_00004388


Basic Information

Item Value
RNA id TCONS_00004388
length 1486
RNA type mRNA
GC content 0.35
exon number 1
gene id XLOC_002303
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36309072 ~ 36310557 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGGGAGAAACCTCAAACACATTAGATTATTTTTGCAATTCTGTTATATACaatgcaaatgtttttaaagCCATGAAAAGCAGAAAACTATTTAATTTCTGAAAAATGAGTGAAACTCTTTTTGTACTTCTGTTAAAACTATACTTTAATCTTGGTAGTTTTTATCATCTGTGCATTATAGAGACTGTCTGCATCTTTCTGCCACTATCCTTTATAGGAGCTTTTTTACTGTGCATATATGAGTATGTTTTAAATGCTTCTGTCTGTATTTTAGGAGTTTGCAAACTGGAAATGGCAAATGAAACTTACATGAAAAATGTTGACAGCTTTATAATAACTGGATTTGATCACCTGCAGAACCAAAAGCTTCTTGGATCTCTCATCTTGATATCCTACATGTTTATATTGATTGGGAACATTATCAATCTGTGTATCATCTCAACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGACATAATGTACTCCTCAACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAATGGTTTCATACTACTCTTGCATCACCAGAACGTTCTTCTATCATGTTGCAGATATTGCAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGAGTTGTTGCCATTAGACTTCCTTTAAGGTATCACAGCATTGTAACAAACTTGcgaacattttgttttatttttgtaacctGGCTCATGGGTTTTGCAGCAGTAGGTTTTTTTACATCTGTGTTGGACAAGTCCCCATACTGTCAGCCTCTCATCAAGTATGCGTTCTGTAGCTATTCATCTCTTGTCCGAGCTGCCTGTGTTGATCCTGAACCCTATTTTGTAATTTCTACAATATATAGCATGGTGCCATTGTGTGGACTGTTTCCCTTTGTTATGTGCACATATGCTTTTTTGGCATATAGTGTGACTAAACTGTCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATTTAATTGTCCTGCTCAGTTATTATGCACCAAAGGTGGTCACTATTTTACTTACTAGAATAGGTGTTGTTTTGACTGTAACGGATCGAAATGCCATTTTAATTGCTGCCTCTCTTGTGCCGCCTTTAATAAACCCCACCGTTTATTGCACCAGGACTAAAGAAATCAGGAGACGATTATCAGACTTCTTTTTGTCCACAAAAATATTACctaataatttcaaataaaattaaaatgtttatcatTGAAATCCTGAAAGTTATGGTTTCAATTATGGTAATGTttcttgttttgatgtttttgtaAAGCTCTTTTATAAATATGTGTTTGTGTTAAATGACAGCATTGGCAGAAGAGTAAATTGTAATGTTAGACAGAAGAAAAAACTTTGTTTGCATTGACAAATACCTGCTAAAAAAACTGTTGATGTTTTGTGATTCCATGTTGAAACATGAATAGTACTGTCTGt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-58 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDART00000167902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 84192 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 84194 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 105471 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 856992 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 894795 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 352132 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 352135 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 357439 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 391283 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 395067 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004387 mRNA upstream 4141 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004386 mRNA upstream 8096 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004385 mRNA upstream 12127 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004383 mRNA upstream 21965 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004382 mRNA upstream 29931 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004389 mRNA downstream 3722 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004390 mRNA downstream 12337 36322894 ~ 36325144 (+) True XLOC_002305
TCONS_00004391 mRNA downstream 18145 36328702 ~ 36330485 (+) True XLOC_002306
TCONS_00004392 mRNA downstream 23945 36334502 ~ 36336537 (+) True XLOC_002307
TCONS_00004393 mRNA downstream 34619 36345176 ~ 36346363 (+) True XLOC_002294
TCONS_00004384 other upstream 20569 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 148785 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 148885 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 663937 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 664274 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004398 other downstream 128749 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 352112 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 650019 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 837112 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2178151 38488708 ~ 38488829 (+) True XLOC_002333