RNA id: TCONS_00004387


Basic Information

Item Value
RNA id TCONS_00004387
length 1965
RNA type mRNA
GC content 0.37
exon number 1
gene id XLOC_002302
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36302967 ~ 36304931 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCATCTAATAACTAAAAgaattatttttatgcaattcTGATCCACACAATTCAGGTGTTCTTAAAGACATAAGAGGAAAACCATATTCTGTATTCTTAAGAATGACTGaaactttttttgttcttttgttaaAACTATACTTTAATCATTGTAGCTTTCGTCAGCTGTATATTACAGAGACTGTCTGCATCTTTCTGCCCTTTTCCTTTTTAGCTGCTTTTTTCCTGTGCATATATGAGTACATTGAAGCTGTGCTTTACTTAATTTTTTgcctataataataattgtgttttaaaatatttttgtctgtATGTTAGGAGGCTGTAAACTAAAAATGGCAAATGCAACTTATTTTGTGAAAAATGTTGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGATCCTTGGGTCCCTCATCTTGATAACCTACATACTCATACTGCTTGGGAATGGCATCAATCTGTGTGTCATCTCGACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGACATAATGTACACTTCAGCCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACTGTTTCATACTACTCTTGCATCTCTAGGATGTTCTTCTATACTCTTGGAGATTTGACTGAGTGCATGGCTCTGACATTAATGGCAATAGACAGAGTTATTGCCATTAGGCTTCCTTTAAGGTATCACAGCATTGTCACAAATTCACGAATATTATGGCTTATTTTTCTAACCTGGATGTTCTGTTTTGCTGCAATAGGTTATTTGATATTACTTGCTGACAGTCTCCCCTACTGTCAACCTGTCATCAAATATATTTACTGTAGTTATGCTGCTGTGGTCAGAGCTGCCTGTGTTGATCCTGAACCTTATTTTGCCATCACTACAATATATAGCATGGTGCCATTGTGTGGCCAGTTTCCCTTTATTCTGTGCACGTATGCTGTTCTGGCATATAGTGTGACTAAACTGTCCAACTCAAGCAGAAAGCAAATGATCAACACCTGCTTGAGTCATATAATTGTCTTGCTCAGTTTTTATGTACCAAAGATTGTCTATATTTTACTAACTAGAATAGGAGTTGTGTTGACTTTAACAGAGCGAAATGCCATTGCAATTGTTTCCTCTCTTGTTCCTCCTTTAATAAACCCCACTGTGTATTGCACCAGGACTAAAGAAATCAGAAAAAGAGTATCAGACGTATTcttgcactcaaaaaaaatagTACCAAGGGATTTTAAATCTTTTCCAAACACTTTATCATCTTAAGTGTGATTGTGATGATGCTTCTCttgcttgtgtttttattttcatgttaaaaACTGTAAGCCAATGGATAGAAAATTTGAtgttgattttcattcattcattcattcattttcttgtcagcttagtccctttattaatccggggtcgccacagcggaattaaccaccaatttatccagcaagtttttatgcagcagatgcctttccagccgcaacccatctctgggaaacatccacacatacattcacacactcatacactacggtcaatttagcctacccaattcactgtgggggaaaccggagcacccggaggaaacccacgcgaaggcagggagaaaatgcaaactccacacagaaaggccaactgagccgaggtttgaaccagcgaccttcttgctgtgaggcgacagcactacctactgtgccactgcctcgccatgttgattttacatatttatttattttattttatttttttcaaattaggTAAAAGattaatgaaaaggaaaggagaAATGTTTTGTTATGACAGTATTGACTGAGTTGACTAAATAAAATGGTgaacagggaaaaaaaacatattctgtattgACATATACTAAACTGTTTGTAGATGCAATGTATTCcattttaatatgcaaaacat

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-59 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000174261

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 78087 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 78089 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 99366 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 850887 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 888690 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 357758 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 357761 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 363065 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 396909 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 400693 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004386 mRNA upstream 1991 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004385 mRNA upstream 6022 36294641 ~ 36296945 (+) True XLOC_002300
TCONS_00004383 mRNA upstream 15860 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004382 mRNA upstream 23826 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004381 mRNA upstream 28078 36272178 ~ 36274889 (+) True XLOC_002296
TCONS_00004388 mRNA downstream 4141 36309072 ~ 36310557 (+) True XLOC_002303
TCONS_00004389 mRNA downstream 9348 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004390 mRNA downstream 17963 36322894 ~ 36325144 (+) True XLOC_002305
TCONS_00004391 mRNA downstream 23771 36328702 ~ 36330485 (+) True XLOC_002306
TCONS_00004392 mRNA downstream 29571 36334502 ~ 36336537 (+) True XLOC_002307
TCONS_00004384 other upstream 14464 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 142680 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 142780 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 657832 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 658169 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004398 other downstream 134375 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 357738 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 655645 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 842738 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2183777 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile

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