XLOC_002300 (or106-8)


Basic Information

Item Value
gene id XLOC_002300
gene name or106-8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36294641 ~ 36296945 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004385
GGATTCAGGGAGTGTCTGAGAAAGTATCATACTAAATTCTTATTTATATTGCTTTATTCTATTTGTAAAAAGTTATAACAAGGGGgagttattttgaaaatactttcTTTATTCTTCAGAATGAATGAAACTCTTTTTGTACTTTTGTTAAAACTGTACTTCAATCTTAACAGTTTTCATCACCTGTACCTTACAGAGACTGCCTGCATCTTTCTGCCCTTTTCTTTTACAGGAGCTTTTTTTCTCTGCATATGTGAGTACATTGAGGATGTAGTTGCCAGCTTTCAACTATACTAACTGGGTACTAACTGTATGTAAGAAGTCTGATAATTGAAAATGGCAAATGTAACTTATTTTGTGAAAAATGTTGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTTGGATCGCTCATCTTGATATCCTACATGTTCATATTGCTTGGGAATGGCATCAATCTGTGTATCATCTCGACTgacaaacatttacacaaaccaatgtacattttaatttgtaatttagcTGTTGTTGACATGATGTACTCCTCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACAGTTTCATACTACTCTTGCATCTCCAGGACATACTTTTTTAATCTTGGAGATTTAACAGAGTCCATGGCTCTGACATTAATGGCATTAGACAGACTTATTGCGATTAATCTTCCTTTAAGGTATAACAGTTTTGTAACAAACTCACGAATATTATGGCTTGTTTTTCTAACCTGGATCTTAAGTTTTGCTGTAATAggttttttaatatatgtgacagACAGTCTCACATACTGTCAGCCTATCATTAAATACGTGTTCTGTAGTTATTCTTCTCTGGTCAGAGCTGCCTGTGTTGATCCTGAACCTTATTTTGCCATTTCTACAATGTATAGTATGGTGACATTATGTGGACTTTTCCCTTTTATTCTGTGCACGTATGCCGTTCTAGCATATAGTGTGACTAAACTGGCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATATAATTGTCCTGTTCAGTTTTTATGTACCAAAGATAGTCTATATTTTATTAACCAGAATAGGACTTGTGTTGACTTTAACAGAGCGAAATGCTGTTGTAATTGTGTCCTGCTATGTTTCTCTTTTAGTAAACCCCACTGTTTATTGCATCAGGACTAAAGGAATCAGAAAAAGAATAACAGATATATTCTTGTACACACAAAAAATAAccaagtaatttaaaataaatttcaaacCTTTTAATCTTATTTGTGATTTGTGGGGATGTTACTCGTTATTGTTTTGGTAATGTTTTTGTGAAGCTTTTGCTCATATTAGAGACTAAGCCAATAGATAGAAATGCTaatgttgatttatttgtttaatgggAAAAGGGAGAATGTTTTGTAAAGACAGTATTGACTGAAATGTAAATGTTGAACAGAAGAATATTCTCTGCATTGACAAAATTCTAGTTAAACAAATCTGTTTGTAGATGCAGTGTATTCCCTATTTGTGTGCAAAAATATAATAGTCATAATAAACATGAGTCTTGTTCCTCAGTCCCAACTGTAATATCAGTTACTGTAATATCAGTTACTACGTTTCTTCAAGAAACaacttaaaactcaactatttagtctccacttcacttcctaatctgcaattgcatctggtgtgaacgcagcattagactttacagacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgccctcatttgtaagtcgctttggataaaagcgtctgctaaatgactaaatgtaaatgtacttattttaatatgtgtGCATAAGCATTTAAaccatttaattacattaaaacatacaAAGCATTTAAGTATTGTTTCTCTGGTGTGGAGACTGGTGAGTGAACCACTGAGCCAATGGGGCAGTTGTGTTGGACCCAAATGAAAACACTTCAAGTAGGGATGCAGAAAACaaggatttattttaaaaacttggaTTCTTCTCAAAAATGAGGTAGCAAAACAGACAAATTAGGTTTTTCTCAGAATTAGGTATATATAAATAACCAagtaatttaaaatgaatttcaaacattttaatcTTATCAGTGATTTTTGGGGATCTTACTCGTTATTGTTTTGGTAATGTTTTTGTGAAGCTTTAGAGACTGTGAGCCAATAGATAGAAATGCTAATgttgattttaattgtttaatgggGACAAGGGGAATGTTTTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-3 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000101554

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004385 True 2305 mRNA 0.34 1 36294641 36296945

Neighbor

gene id symbol gene type direction distance location
XLOC_002299 BX088524.1 coding upstream 6138 36287841 ~ 36288503 (+)
XLOC_002298 or106-9 coding upstream 7534 36285568 ~ 36287107 (+)
XLOC_002297 or106-10 coding upstream 15500 36277528 ~ 36279141 (+)
XLOC_002296 or106-11 coding upstream 19752 36272178 ~ 36274889 (+)
XLOC_002295 or106-12 coding upstream 27202 36265164 ~ 36267439 (+)
XLOC_002301 or106-7 coding downstream 2596 36299541 ~ 36300976 (+)
XLOC_002302 or106-6 coding downstream 6022 36302967 ~ 36304931 (+)
XLOC_002303 or106-5 coding downstream 12127 36309072 ~ 36310557 (+)
XLOC_002304 or106-4 coding downstream 17334 36314279 ~ 36316758 (+)
XLOC_002305 or106-3 coding downstream 25949 36322894 ~ 36325144 (+)
XLOC_002289 BX088524.3 non-coding upstream 134354 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 649506 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 649843 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 880364 35369592 ~ 35414277 (+)
XLOC_002315 CU694807.1 non-coding downstream 429293 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 508091 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 663631 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 850724 37147669 ~ 37147784 (+)
XLOC_002325 NA non-coding downstream 1181300 37478245 ~ 37478556 (+)

Expression


Co-expression Network