XLOC_002304 (or106-4)


Basic Information

Item Value
gene id XLOC_002304
gene name or106-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36314279 ~ 36316758 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004389
TCTGAATGGGGGAAATATCAAACAcctttaatgttttcattttttatttgcaacTCTAATCTACTCAACTGTAATGTTTTCAGAGCTATCAAAAGGGAGGAAAACTAGTCTGCATTCTTAAGAATGATTGAAACTTTTTTTGTACTTCTGTTAAAACTATACTTTCATCTTTGTAGTTTTCATCACCTGTATATTACAGAGACTGTCTGCATCTTTCTGCCGTTTGCCTTTATAGGAGCTTTTTTCCTGGTCATATACGAGTACATAGAGGctgtaatttactttattttttcatctgtattgttttttaaaatgtttgtgtctGTATATTAAGAGGTTGTCAACTGAAAATGGCAAATGAAACTTATTTTGTGAAAAATGTTGACAGCTTTACAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTTCTTGGATTCCTCATCCTGATATCCTACATGCTCATTCTGCTTGGAAATGGCATCAATCTGTGTATCATCTCAACTAACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTCTTGCTGACATCATTTATACCACGATAAGCAGTGCAACCATGATCTCAGTGCTGCTGGCAGAGGTTAAAACTGTTTCATACTACTCTTGTATCCTCAGGATGTACTTCTATCATCTTGGTGATTTAACAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGAGTTATTGCCATTAGGCTTCCTTTAAGGTATCACAGCATTGTCACAAATTCACGAATATTATGGCTTATTTTTCTAACCTGGATGTTCTGTTTTGCTGCAATAGGTTATTTGATATTACTTGCTGACAGTCTCCCCTACTGTCAACCTGTCATCAAATATATTTACTGTAGTTATGCTGCTGTGGTCAGAGCTGCCTGTGTTGATCCTGAACCTTATTTTGCCATCTCTACAATATATAGCATGGTGCCATTGTGTGGCCAGTTTCCCTTTATTCTGTGCACGTATGCTGTTCTGGCATATAGTGTGACTAAACTTTCCAACTCAAGCAGAAAGCAAATGATCAATACTTGCTTGAGTCATTTAATTGTCCTACTTTGTTGTTATGCACCAAAGGTGGTCTCTTACTTACTAACTAGAATAGGAGTTGTGTTGACTTTAACAGAGCGAAATGCAATTTTGATTGTTGTCTCTCTTGTTCCTTCTTTAATAAACCCCATTGTTTATTGTTCCAGGACTAAAGAAATcaggaaaatattatcagatgttTTGATGCGCAAAAAGATTTCACcaagtaatttttaaataaatttcaaatgATTTATCATCTTAATTATGATAGTGATATTACTGTTGCTTGTTTAGTGATGCTCTTGTTAGAGACCGTAAGCCAAAGCATAGAAATGCTAATGATGAAGTGTTTGTTCAAAGGGTAAAGGTAAATTAATATAGAatatgttttctgtttgttttttaaatgacagcaTTAGCATAAATgtcaaatgtaatgtttaacagaaagaaaataTAATAGTACTTTAGTTCAGGTCACAATTTATGTTATTAACAAGCCATTAGCCAACATTACAAGATTAAATAACTACTAACTAGCTGTTATTTAATAGTAAGGAAGAAGCTGTGTTTAGGTTTTGAGTAGGATTAGGAAAGCAGAATAGGATTGCGCTTCataacagttaatatcttaataattgaCAGGTAATAACCCTGTAGTTAATGGGATAAATTGTGACCTATACTAAAGTTTTACCACAAAAGTTTTCTTTGCATTGACAAATACCtgctaaacaaaacaatattcatgtgttttatattatttgtgaAACATTATAAACAATAGTATGCCAtgtataacatgcattaaacaaaaGTGAGTTGTCTTTAAAATATCAGTTACTGATTTTATTAAAACGTGTGACCCTATCTCAGTGtcgggtaaataaataaaactaaatgtagGTAGTTAACAGGTTAATATTTTTTGCAGCATTAAttctttatattaactaataatgTAGATCCATCACTTTAAGATGTAAACAAAATACTTTTGCTGTGATATACTGATTGCAAACTTTCACACACCATCCTTAACATGTGTTCTCATCTGATTATAGTGATATGGACAGTTTTTGCACAAGCTTTCCAATTTATGTCACCAGCATTATGTCATTAGATGAATTTATCATAATCGAACTATCATAACcatttaattttaaagtgtattagTGACTGTGAGACTTTTGTTTGAATTTCACTGACACAATGACTTTGTCagcattttcttaaaaaatataagcAATTTTGCTACAAAATTGAAGAGAGACTTCTTGAGAGTGCATATAAACCTCACATTCTTTGAAAATATTCTTTGAATTATCCTGGCTGAAACATCCCGAGTCAAATAAAATCACATATCCGTCACACAAAATCAATCTAAGACAGCCTCGGAAGGAAGGGAAGGTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-57 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000102614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004389 True 2480 mRNA 0.33 1 36314279 36316758

Neighbor

gene id symbol gene type direction distance location
XLOC_002303 or106-5 coding upstream 3722 36309072 ~ 36310557 (+)
XLOC_002302 or106-6 coding upstream 9348 36302967 ~ 36304931 (+)
XLOC_002301 or106-7 coding upstream 13303 36299541 ~ 36300976 (+)
XLOC_002300 or106-8 coding upstream 17334 36294641 ~ 36296945 (+)
XLOC_002299 BX088524.1 coding upstream 25776 36287841 ~ 36288503 (+)
XLOC_002305 or106-3 coding downstream 6136 36322894 ~ 36325144 (+)
XLOC_002306 or106-2 coding downstream 11944 36328702 ~ 36330485 (+)
XLOC_002307 or106-1 coding downstream 17744 36334502 ~ 36336537 (+)
XLOC_002308 or104-2 coding downstream 32467 36349225 ~ 36350693 (+)
XLOC_002309 or104-1 coding downstream 38105 36354863 ~ 36356642 (+)
XLOC_002289 BX088524.3 non-coding upstream 153992 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 669144 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 669481 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 900002 35369592 ~ 35414277 (+)
XLOC_002315 CU694807.1 non-coding downstream 409480 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 488278 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 643818 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 830911 37147669 ~ 37147784 (+)
XLOC_002325 NA non-coding downstream 1161487 37478245 ~ 37478556 (+)

Expression


Co-expression Network