XLOC_002303 (or106-5)


Basic Information

Item Value
gene id XLOC_002303
gene name or106-5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36309072 ~ 36310557 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004388
GAATGGGAGAAACCTCAAACACATTAGATTATTTTTGCAATTCTGTTATATACaatgcaaatgtttttaaagCCATGAAAAGCAGAAAACTATTTAATTTCTGAAAAATGAGTGAAACTCTTTTTGTACTTCTGTTAAAACTATACTTTAATCTTGGTAGTTTTTATCATCTGTGCATTATAGAGACTGTCTGCATCTTTCTGCCACTATCCTTTATAGGAGCTTTTTTACTGTGCATATATGAGTATGTTTTAAATGCTTCTGTCTGTATTTTAGGAGTTTGCAAACTGGAAATGGCAAATGAAACTTACATGAAAAATGTTGACAGCTTTATAATAACTGGATTTGATCACCTGCAGAACCAAAAGCTTCTTGGATCTCTCATCTTGATATCCTACATGTTTATATTGATTGGGAACATTATCAATCTGTGTATCATCTCAACTGACAGACATTTACACAAACCAATGTACATATTAATCTGTAATCTAGCTGTTGTTGACATAATGTACTCCTCAACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAATGGTTTCATACTACTCTTGCATCACCAGAACGTTCTTCTATCATGTTGCAGATATTGCAGAGTGCATGGCTCTGACATTAATGGCAATAGACAGAGTTGTTGCCATTAGACTTCCTTTAAGGTATCACAGCATTGTAACAAACTTGcgaacattttgttttatttttgtaacctGGCTCATGGGTTTTGCAGCAGTAGGTTTTTTTACATCTGTGTTGGACAAGTCCCCATACTGTCAGCCTCTCATCAAGTATGCGTTCTGTAGCTATTCATCTCTTGTCCGAGCTGCCTGTGTTGATCCTGAACCCTATTTTGTAATTTCTACAATATATAGCATGGTGCCATTGTGTGGACTGTTTCCCTTTGTTATGTGCACATATGCTTTTTTGGCATATAGTGTGACTAAACTGTCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATTTAATTGTCCTGCTCAGTTATTATGCACCAAAGGTGGTCACTATTTTACTTACTAGAATAGGTGTTGTTTTGACTGTAACGGATCGAAATGCCATTTTAATTGCTGCCTCTCTTGTGCCGCCTTTAATAAACCCCACCGTTTATTGCACCAGGACTAAAGAAATCAGGAGACGATTATCAGACTTCTTTTTGTCCACAAAAATATTACctaataatttcaaataaaattaaaatgtttatcatTGAAATCCTGAAAGTTATGGTTTCAATTATGGTAATGTttcttgttttgatgtttttgtaAAGCTCTTTTATAAATATGTGTTTGTGTTAAATGACAGCATTGGCAGAAGAGTAAATTGTAATGTTAGACAGAAGAAAAAACTTTGTTTGCATTGACAAATACCTGCTAAAAAAACTGTTGATGTTTTGTGATTCCATGTTGAAACATGAATAGTACTGTCTGt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-58 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1).

Ensembl:

ensembl_id ENSDARG00000100410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004388 True 1486 mRNA 0.35 1 36309072 36310557

Neighbor

gene id symbol gene type direction distance location
XLOC_002302 or106-6 coding upstream 4141 36302967 ~ 36304931 (+)
XLOC_002301 or106-7 coding upstream 8096 36299541 ~ 36300976 (+)
XLOC_002300 or106-8 coding upstream 12127 36294641 ~ 36296945 (+)
XLOC_002299 BX088524.1 coding upstream 20569 36287841 ~ 36288503 (+)
XLOC_002298 or106-9 coding upstream 21965 36285568 ~ 36287107 (+)
XLOC_002304 or106-4 coding downstream 3722 36314279 ~ 36316758 (+)
XLOC_002305 or106-3 coding downstream 12337 36322894 ~ 36325144 (+)
XLOC_002306 or106-2 coding downstream 18145 36328702 ~ 36330485 (+)
XLOC_002307 or106-1 coding downstream 23945 36334502 ~ 36336537 (+)
XLOC_002308 or104-2 coding downstream 38668 36349225 ~ 36350693 (+)
XLOC_002289 BX088524.3 non-coding upstream 148785 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 663937 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 664274 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 894795 35369592 ~ 35414277 (+)
XLOC_002315 CU694807.1 non-coding downstream 415681 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 494479 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 650019 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 837112 37147669 ~ 37147784 (+)
XLOC_002325 NA non-coding downstream 1167688 37478245 ~ 37478556 (+)

Expression


Co-expression Network