XLOC_002309 (or104-1)


Basic Information

Item Value
gene id XLOC_002309
gene name or104-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36354863 ~ 36356642 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004396
ATGGGAGACGTGACACGCAGAGCCAGGAATATCCTTATCTTATTCTTATATTCTTGTACTGAAGAATAAGCAAGTATGTCACAGGCAAACGACACCACAGCCTCTACTGTAACTGAGTTTTTCATCATGGGTTTTCCTGGACTTCTGCCTAAATACTACAGCCTGACAGCGGCGCTTTTATTCTGCATCTACATCGCTGTGATCACCGGCAACTCTCTCATTGTGGTTCTGTTTGTGATCGAGCGCAGTCTCCACAAGCCCATGTACATTATCATGCTGAGTCTGTCTGTGTCTGATATCTGCTTCTGCACAGTCGCTTTGCCGAAAGTCATTTCTCGCTATTGGTTTAATGACGGTTTTATTTCcttctatgtttgtttgtttcaaaggCAGCTCATTCACTATTTTGGTACGTTGAACTCTCTCATTATGATGCTCATGGCTTTAGATCGATATTTGGCGATCTGTCACCCACTCAGATACCCTGTTTTAATGACAAACCGCACTATGAGACTGTTAGTAGGGTTTTCATGGGTCACTGCAATGATTGCACCATCAATTAGTTTATCTTTAACACTGAAACTGCCATTCTGTGGGCCAAACATGATTGCTCATTGCTTCTGTGATTCTTTATCAATGAATCAGCTCGCCTGTGCTGATGCATCCTTCTATAACCTTATTGCCTTCGGTGTGGCGATGTTTGTGCTCCTCGTTCCATTATCCTTCATTATATTTTCCTATGCAAGTATCTTAGTTTCTGTGCTTCAAATAGCAAATGCAAAAGGCCGACTGAAAGCCCTTTCTACATGTGCTACACAGCTCACCATCATAAGCATCTATTACGTGCCACGCTTTGCAGTTTACATCACTTCTAACGTCCCGAATGCGCAGATGGACAAAGCTGAGAAGATCGCACTGGTCATGTTTTACAGTCTGCTTCCACCACTGATGAACCCTTTCATTTACTTCATCAGGATCAGAGAAATCAGACAGGTCTTTCTCAAATGCTGTGCTCAGAGGAAAAGGATGATCAGTAGCTCAACAACTGTCTCTAAATAAGTCTGCTTGGTGTTTACATGCATCTCGTATACATTAAATGATTTATGCGCTGTTCTTTtgtatttacacattttaatttgcAATCTTTTTTGGTTgcgctttattttgatgggctgtttgttgaatttactgTAAGTGACATTGTATCTACATGCCagttaattctcattagattataagtaggttggggttagtgttagttgacatgtacttgcaaagtttcctagtttaatgtctgttgaaggagcagtattagcAGATACTAAAAagtcagtctactaatactcaaatggaccatcaagataaagtgttacctttttttttaaccctGGACCCCAAAATCAGCACTTTATTGCAATTGAGATGCGTACATCATCTAAATGCTGAATAAATATGCTTATTGTTGATGTACTGTTTGTTAGTGCAGGACAATATTTGGTCAAGATACAAATAATTGAAAATGTCTGaaggttc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-53 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OR10K2 (olfactory receptor family 10 subfamily K member 2) and OR10Z1 (olfactory receptor family 10 subfamily Z member 1).

Ensembl:

ensembl_id ENSDARG00000101806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004396 True 1533 mRNA 0.40 2 36354863 36356642

Neighbor

gene id symbol gene type direction distance location
XLOC_002308 or104-2 coding upstream 4170 36349225 ~ 36350693 (+)
XLOC_002307 or106-1 coding upstream 18326 36334502 ~ 36336537 (+)
XLOC_002306 or106-2 coding upstream 24378 36328702 ~ 36330485 (+)
XLOC_002305 or106-3 coding upstream 29719 36322894 ~ 36325144 (+)
XLOC_002304 or106-4 coding upstream 38105 36314279 ~ 36316758 (+)
XLOC_002310 uspl1 coding downstream 82651 36439293 ~ 36455985 (+)
XLOC_002311 alox5ap coding downstream 101921 36458563 ~ 36463715 (+)
XLOC_002312 ucp3 coding downstream 293580 36650222 ~ 36656693 (+)
XLOC_002313 ucp2 coding downstream 305998 36662640 ~ 36673388 (+)
XLOC_002314 rab6a coding downstream 338955 36695597 ~ 36711701 (+)
XLOC_002299 BX088524.1 non-coding upstream 66360 36287841 ~ 36288503 (+)
XLOC_002289 BX088524.3 non-coding upstream 194576 36158967 ~ 36160287 (+)
XLOC_002283 dre-mir-132-2 non-coding upstream 709728 35645017 ~ 35645135 (+)
XLOC_002282 BX663516.1 non-coding upstream 710065 35644719 ~ 35644798 (+)
XLOC_002277 NA non-coding upstream 940586 35369592 ~ 35414277 (+)
XLOC_002315 CU694807.1 non-coding downstream 369596 36726238 ~ 36733011 (+)
XLOC_002317 NA non-coding downstream 448394 36805036 ~ 37064390 (+)
XLOC_002318 BX323076.3 non-coding downstream 603934 36960576 ~ 36960690 (+)
XLOC_002321 CT027794.1 non-coding downstream 791027 37147669 ~ 37147784 (+)
XLOC_002325 NA non-coding downstream 1121603 37478245 ~ 37478556 (+)

Expression


Co-expression Network