RNA id: TCONS_00004385


Basic Information

Item Value
RNA id TCONS_00004385
length 2305
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_002300
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36294641 ~ 36296945 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATTCAGGGAGTGTCTGAGAAAGTATCATACTAAATTCTTATTTATATTGCTTTATTCTATTTGTAAAAAGTTATAACAAGGGGgagttattttgaaaatactttcTTTATTCTTCAGAATGAATGAAACTCTTTTTGTACTTTTGTTAAAACTGTACTTCAATCTTAACAGTTTTCATCACCTGTACCTTACAGAGACTGCCTGCATCTTTCTGCCCTTTTCTTTTACAGGAGCTTTTTTTCTCTGCATATGTGAGTACATTGAGGATGTAGTTGCCAGCTTTCAACTATACTAACTGGGTACTAACTGTATGTAAGAAGTCTGATAATTGAAAATGGCAAATGTAACTTATTTTGTGAAAAATGTTGACAGCTTTATAATCACTGGATTTGATCACCTGCAGAACCAAAAGCTCCTTGGATCGCTCATCTTGATATCCTACATGTTCATATTGCTTGGGAATGGCATCAATCTGTGTATCATCTCGACTgacaaacatttacacaaaccaatgtacattttaatttgtaatttagcTGTTGTTGACATGATGTACTCCTCGACCTGCAGCACAACCATGATCTCAGTGCTGCTGGCTGAGATTAAAACAGTTTCATACTACTCTTGCATCTCCAGGACATACTTTTTTAATCTTGGAGATTTAACAGAGTCCATGGCTCTGACATTAATGGCATTAGACAGACTTATTGCGATTAATCTTCCTTTAAGGTATAACAGTTTTGTAACAAACTCACGAATATTATGGCTTGTTTTTCTAACCTGGATCTTAAGTTTTGCTGTAATAggttttttaatatatgtgacagACAGTCTCACATACTGTCAGCCTATCATTAAATACGTGTTCTGTAGTTATTCTTCTCTGGTCAGAGCTGCCTGTGTTGATCCTGAACCTTATTTTGCCATTTCTACAATGTATAGTATGGTGACATTATGTGGACTTTTCCCTTTTATTCTGTGCACGTATGCCGTTCTAGCATATAGTGTGACTAAACTGGCCAACTCAAGCAGAAAGCAAATGATCAACACTTGCTTGAGTCATATAATTGTCCTGTTCAGTTTTTATGTACCAAAGATAGTCTATATTTTATTAACCAGAATAGGACTTGTGTTGACTTTAACAGAGCGAAATGCTGTTGTAATTGTGTCCTGCTATGTTTCTCTTTTAGTAAACCCCACTGTTTATTGCATCAGGACTAAAGGAATCAGAAAAAGAATAACAGATATATTCTTGTACACACAAAAAATAAccaagtaatttaaaataaatttcaaacCTTTTAATCTTATTTGTGATTTGTGGGGATGTTACTCGTTATTGTTTTGGTAATGTTTTTGTGAAGCTTTTGCTCATATTAGAGACTAAGCCAATAGATAGAAATGCTaatgttgatttatttgtttaatgggAAAAGGGAGAATGTTTTGTAAAGACAGTATTGACTGAAATGTAAATGTTGAACAGAAGAATATTCTCTGCATTGACAAAATTCTAGTTAAACAAATCTGTTTGTAGATGCAGTGTATTCCCTATTTGTGTGCAAAAATATAATAGTCATAATAAACATGAGTCTTGTTCCTCAGTCCCAACTGTAATATCAGTTACTGTAATATCAGTTACTACGTTTCTTCAAGAAACaacttaaaactcaactatttagtctccacttcacttcctaatctgcaattgcatctggtgtgaacgcagcattagactttacagacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgccctcatttgtaagtcgctttggataaaagcgtctgctaaatgactaaatgtaaatgtacttattttaatatgtgtGCATAAGCATTTAAaccatttaattacattaaaacatacaAAGCATTTAAGTATTGTTTCTCTGGTGTGGAGACTGGTGAGTGAACCACTGAGCCAATGGGGCAGTTGTGTTGGACCCAAATGAAAACACTTCAAGTAGGGATGCAGAAAACaaggatttattttaaaaacttggaTTCTTCTCAAAAATGAGGTAGCAAAACAGACAAATTAGGTTTTTCTCAGAATTAGGTATATATAAATAACCAagtaatttaaaatgaatttcaaacattttaatcTTATCAGTGATTTTTGGGGATCTTACTCGTTATTGTTTTGGTAATGTTTTTGTGAAGCTTTAGAGACTGTGAGCCAATAGATAGAAATGCTAATgttgattttaattgtttaatgggGACAAGGGGAATGTTTTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-3 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000158983

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004376 lncRNA upstream 69761 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA upstream 69763 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00005925 lncRNA upstream 91040 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00005726 lncRNA upstream 842561 35446908 ~ 35452080 (+) True XLOC_002279
TCONS_00005923 lncRNA upstream 880364 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00004404 lncRNA downstream 365744 36662689 ~ 36668723 (+) False XLOC_002313
TCONS_00004405 lncRNA downstream 365747 36662692 ~ 36666211 (+) False XLOC_002313
TCONS_00004406 lncRNA downstream 371051 36667996 ~ 36669034 (+) True XLOC_002313
TCONS_00004409 lncRNA downstream 404895 36701840 ~ 36705717 (+) False XLOC_002314
TCONS_00004410 lncRNA downstream 408679 36705624 ~ 36706847 (+) True XLOC_002314
TCONS_00004383 mRNA upstream 7534 36285568 ~ 36287107 (+) True XLOC_002298
TCONS_00004382 mRNA upstream 15500 36277528 ~ 36279141 (+) True XLOC_002297
TCONS_00004381 mRNA upstream 19752 36272178 ~ 36274889 (+) True XLOC_002296
TCONS_00004380 mRNA upstream 27202 36265164 ~ 36267439 (+) True XLOC_002295
TCONS_00004375 mRNA upstream 94590 36197968 ~ 36200051 (+) True XLOC_002293
TCONS_00004386 mRNA downstream 2596 36299541 ~ 36300976 (+) True XLOC_002301
TCONS_00004387 mRNA downstream 6022 36302967 ~ 36304931 (+) True XLOC_002302
TCONS_00004388 mRNA downstream 12127 36309072 ~ 36310557 (+) True XLOC_002303
TCONS_00004389 mRNA downstream 17334 36314279 ~ 36316758 (+) True XLOC_002304
TCONS_00004390 mRNA downstream 25949 36322894 ~ 36325144 (+) True XLOC_002305
TCONS_00004384 other upstream 6138 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 134354 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other upstream 134454 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004361 other upstream 649506 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004360 other upstream 649843 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004398 other downstream 142361 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004403 other downstream 365724 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004415 other downstream 663631 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004421 other downstream 850724 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004438 other downstream 2191763 38488708 ~ 38488829 (+) True XLOC_002333

Expression Profile

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