RNA id: TCONS_00005726


Basic Information

Item Value
RNA id TCONS_00005726
length 828
lncRNA type sense_over
GC content 0.48
exon number 5
gene id XLOC_002279
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35439952 ~ 35452191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGCTCGGTGGAGTCAGCGGACAGACTGCAGGTGTGGACGGCTTCACTGCATCAGCAAGATGAGATATTTGCAGAGGAGGGCTCTGGTCTCTTGGTTCCCTGCAGCGTTCCTCAACCTCGCCACAATTTCACCCTCACCTGGAGCTTCAGCAGATCCAGCGAATCCATCGTAATCTTCAGTTTCGACAGCCGGAGTCGTCGCCTACTGAACCTGTGGGACGGCAGAGCTGAAGTGGACATTGATCAGGCACATTTGGGCAACGGCTCCCTTCATCTGCTGAACTTGGATAGTTTAACACACAGCGGCTCCTACATCTGCACTTTCTATGGTTTCCAGATTAGGCATCAAGTCCAAACCCACGTCAACATTACCGTCCGCATCACCGATGATGACGAGTATGACTGCAGGAGGTCCTGGTGGGGAACTGCTGCATCTGTCTTCATATTTCTGATCACTATATCTGTAGCCCTGTCTCGGTGTTTTAGACTGAGAGGTGAACGTTCAGCACAAAACCACGCAGACATCAATAAACGAGTCAGATGTTGCAAGACACCAGAAATGCCACTATTTGAAAGACAAGGACAAGAAGAGCCAAGACGCAATGGTTTGGAATCTCCGGAGAAAGAAATTCACGTGATGTCTGACACAACGCCGCTCAAACAAGATCCTGACGGCCTTAAAAATGACATCCTACAGAATAAAAGCATGATTATTAATGATTCATCTACATCAGAGGAAAGACATGAATCCAGGCCGCAAACACCAACAGCTGCTATCATAACTCTCTTTATATCTGAAATCAACACAGACGCAGCTGATGAGAAG

Function

GO:

id name namespace
GO:0042102 positive regulation of T cell proliferation biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0006955 immune response biological_process
GO:0031295 T cell costimulation biological_process
GO:0071222 cellular response to lipopolysaccharide biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005923 lncRNA upstream 32631 35369819 ~ 35414277 (+) True XLOC_002277
TCONS_00005922 lncRNA upstream 35689 35369819 ~ 35411219 (+) False XLOC_002277
TCONS_00005921 lncRNA upstream 57211 35369592 ~ 35389697 (+) False XLOC_002277
TCONS_00004348 lncRNA upstream 154677 35291231 ~ 35292231 (+) True XLOC_002274
TCONS_00005920 lncRNA upstream 204880 35236348 ~ 35242028 (+) True XLOC_002271
TCONS_00005924 lncRNA downstream 749104 36201184 ~ 36342453 (+) False XLOC_002294
TCONS_00004376 lncRNA downstream 749114 36201194 ~ 36224880 (+) False XLOC_002294
TCONS_00004377 lncRNA downstream 749118 36201198 ~ 36224878 (+) False XLOC_002294
TCONS_00004378 lncRNA downstream 749119 36201199 ~ 36381043 (+) False XLOC_002294
TCONS_00005925 lncRNA downstream 749129 36201209 ~ 36203601 (+) False XLOC_002294
TCONS_00004353 mRNA upstream 9284 35417099 ~ 35437624 (+) False XLOC_002278
TCONS_00004354 mRNA upstream 16948 35422802 ~ 35429960 (+) True XLOC_002278
TCONS_00004350 mRNA upstream 85542 35347993 ~ 35361366 (+) False XLOC_002276
TCONS_00004352 mRNA upstream 85542 35358675 ~ 35361366 (+) True XLOC_002276
TCONS_00004351 mRNA upstream 91166 35352435 ~ 35355742 (+) False XLOC_002276
TCONS_00004356 mRNA downstream 16898 35468978 ~ 35528389 (+) False XLOC_002280
TCONS_00004357 mRNA downstream 39136 35491216 ~ 35500703 (+) False XLOC_002280
TCONS_00004358 mRNA downstream 74448 35526528 ~ 35528389 (+) True XLOC_002280
TCONS_00004359 mRNA downstream 102139 35554219 ~ 35580086 (+) True XLOC_002281
TCONS_00004362 mRNA downstream 500452 35952532 ~ 35959571 (+) False XLOC_002284
TCONS_00004347 other upstream 148209 35288158 ~ 35298699 (+) False XLOC_002274
TCONS_00004342 other upstream 290380 35153100 ~ 35156528 (+) False XLOC_002270
TCONS_00004338 other upstream 437471 35002798 ~ 35009437 (+) False XLOC_002268
TCONS_00004339 other upstream 437812 35005895 ~ 35009096 (+) True XLOC_002268
TCONS_00004335 other upstream 495376 34951056 ~ 34951532 (+) True XLOC_002266
TCONS_00004360 other downstream 192639 35644719 ~ 35644798 (+) True XLOC_002282
TCONS_00004361 other downstream 192937 35645017 ~ 35645135 (+) True XLOC_002283
TCONS_00004370 other downstream 706887 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004371 other downstream 707532 36159612 ~ 36160187 (+) True XLOC_002289
TCONS_00004384 other downstream 835761 36287841 ~ 36288503 (+) True XLOC_002299

Expression Profile

//