Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004338 |
| length | 847 |
| RNA type | processed_transcript |
| GC content | 0.42 |
| exon number | 9 |
| gene id | XLOC_002268 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 35002786 ~ 35011502 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0034427 | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | biological_process |
| GO:0016075 | rRNA catabolic process | biological_process |
| GO:0071028 | nuclear mRNA surveillance | biological_process |
| GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
| GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
| GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | biological_process |
| GO:0034473 | U1 snRNA 3'-end processing | biological_process |
| GO:0034475 | U4 snRNA 3'-end processing | biological_process |
| GO:0034476 | U5 snRNA 3'-end processing | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006401 | RNA catabolic process | biological_process |
| GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
| GO:0042552 | myelination | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0021693 | cerebellar Purkinje cell layer structural organization | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
| GO:0000177 | cytoplasmic exosome (RNase complex) | cellular_component |
| GO:0000178 | exosome (RNase complex) | cellular_component |
| GO:0017091 | AU-rich element binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-1736 | Acts upstream of or within axonogenesis; cerebellar Purkinje cell layer structural organization; and myelination. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in alar plate midbrain region; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC8 (exosome component 8). |
| ensembl_id | ENSDART00000145238 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005918 | lncRNA | upstream | 762960 | 34239060 ~ 34239838 (+) | True | XLOC_002263 |
| TCONS_00005917 | lncRNA | upstream | 809492 | 34190542 ~ 34193306 (+) | True | XLOC_002261 |
| TCONS_00005916 | lncRNA | upstream | 944481 | 34057291 ~ 34058317 (+) | False | XLOC_002256 |
| TCONS_00005725 | lncRNA | upstream | 1131786 | 33870189 ~ 33871012 (+) | True | XLOC_002252 |
| TCONS_00005724 | lncRNA | upstream | 1634633 | 33363402 ~ 33368165 (+) | True | XLOC_002245 |
| TCONS_00005919 | lncRNA | downstream | 44874 | 35054311 ~ 35058561 (+) | True | XLOC_002269 |
| TCONS_00004341 | lncRNA | downstream | 143504 | 35152941 ~ 35156528 (+) | False | XLOC_002270 |
| TCONS_00005920 | lncRNA | downstream | 226911 | 35236348 ~ 35242028 (+) | True | XLOC_002271 |
| TCONS_00004348 | lncRNA | downstream | 281794 | 35291231 ~ 35292231 (+) | True | XLOC_002274 |
| TCONS_00005921 | lncRNA | downstream | 360155 | 35369592 ~ 35389697 (+) | False | XLOC_002277 |
| TCONS_00004336 | mRNA | upstream | 41040 | 34958583 ~ 34961758 (+) | True | XLOC_002267 |
| TCONS_00004329 | mRNA | upstream | 267803 | 34426256 ~ 34734995 (+) | False | XLOC_002265 |
| TCONS_00004331 | mRNA | upstream | 268709 | 34623183 ~ 34734089 (+) | False | XLOC_002265 |
| TCONS_00004332 | mRNA | upstream | 268752 | 34685135 ~ 34734046 (+) | True | XLOC_002265 |
| TCONS_00004330 | mRNA | upstream | 389993 | 34426571 ~ 34612805 (+) | False | XLOC_002265 |
| TCONS_00004340 | mRNA | downstream | 143491 | 35152928 ~ 35163612 (+) | False | XLOC_002270 |
| TCONS_00004343 | mRNA | downstream | 143663 | 35153100 ~ 35163611 (+) | True | XLOC_002270 |
| TCONS_00004344 | mRNA | downstream | 248214 | 35257651 ~ 35262368 (+) | True | XLOC_002272 |
| TCONS_00004345 | mRNA | downstream | 255646 | 35265083 ~ 35275350 (+) | True | XLOC_002273 |
| TCONS_00004346 | mRNA | downstream | 266528 | 35275965 ~ 35312885 (+) | False | XLOC_002274 |
| TCONS_00004333 | other | upstream | 50933 | 34937548 ~ 34951865 (+) | False | XLOC_002266 |
| TCONS_00004334 | other | upstream | 51266 | 34950095 ~ 34951532 (+) | False | XLOC_002266 |
| TCONS_00004335 | other | upstream | 51266 | 34951056 ~ 34951532 (+) | True | XLOC_002266 |
| TCONS_00004321 | other | upstream | 815809 | 34175468 ~ 34186989 (+) | False | XLOC_002260 |
| TCONS_00004320 | other | upstream | 831373 | 34151286 ~ 34171425 (+) | True | XLOC_002259 |
| TCONS_00004342 | other | downstream | 143663 | 35153100 ~ 35156528 (+) | False | XLOC_002270 |
| TCONS_00004347 | other | downstream | 278721 | 35288158 ~ 35298699 (+) | False | XLOC_002274 |
| TCONS_00004360 | other | downstream | 635282 | 35644719 ~ 35644798 (+) | True | XLOC_002282 |
| TCONS_00004361 | other | downstream | 635580 | 35645017 ~ 35645135 (+) | True | XLOC_002283 |
| TCONS_00004370 | other | downstream | 1149530 | 36158967 ~ 36160287 (+) | False | XLOC_002289 |
